PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G157100.1

Common Name

B456_009G157100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 146aa MW: 16622.5 Da PI: 10.2429

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G157100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	33.3	6.2e-11	19	65	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i+ + r ++fskR +gi KK + LS+ C+ e++ iif + gk y + Gorai.009G157100.1 19 IKIEHDRLISFSKRCTGIYKKISKLSTICGGEILFIIFLPAGKPYSF 65 55567799*********************************998877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.5E-11	9	68	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	18.362	9	69	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-18	10	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-10	11	31	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.5E-13	20	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-10	31	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-10	46	67	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MASSGKKTRG KQKIEIKIIK IEHDRLISFS KRCTGIYKKI SKLSTICGGE ILFIIFLPAG 60 KPYSFGHPSV ESVAKRFLNP NQPFNKTTDA PVEAYCKVRI NLLVKDFNEV YDQLDVLKEK 120 QKAIDLAQKS HGTETYHWWK KGMLY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483076.1	1e-71	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A0D2TKP1	1e-103	A0A0D2TKP1_GOSRA; Uncharacterized protein
STRING	Gorai.009G157100.1	1e-104	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	4e-27	AGAMOUS-like 57

Link Out ? help Back to Top
Phytozome	Gorai.009G157100.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]