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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.009G184100.1 |
| Common Name | B456_009G184100 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
GRAS |
| Protein Properties |
Length: 549aa MW: 61322.5 Da PI: 6.4628 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.009G184100.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 396 | 3.9e-121 | 178 | 548 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
l++ L++c +a++++d+ ++ l+ l++++s +g+p+qRl ay++e+L+arl +s+s++y+al+++e + sse ++++++++ ++P+
Gorai.009G184100.1 178 LKQILVACGQALHDDDMLTVTGLMHVLEKMVSVSGEPIQRLGAYVLEGLRARLESSGSNIYRALKCKEPT---SSELMSYMHILFRICPYW 265
5789*****************************************************************9...99**************** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
kf++ N I e +e e ++HiiDf+i qG+QW+ L+ aLa+Rp+gpps+RiTg+++++s+ + l+ +g+rL++fA + +v+fef+
Gorai.009G184100.1 266 KFAYTSGNVVIKEVLEYEGKIHIIDFQIAQGTQWMFLIAALAKRPGGPPSIRITGIDDSQSNhaRGGGLHIVGQRLSEFAWSYNVSFEFHD 356
**********************************************************9988889999*********************** PP
GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
+a + +++le+L+v+pgEalaVnl + lh+++desvs+ ++rd++L+lvkslsPkvv+++eqe+++n+++F+ r le+l+yysa+f+s+
Gorai.009G184100.1 357 -AAMSGCEIQLEHLKVQPGEALAVNLPYVLHHMPDESVSIWNHRDRLLRLVKSLSPKVVTLTEQESNTNTSPFFSRYLETLDYYSAMFESI 446
.899999************************************************************************************ PP
GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
++ pr++++ri+ E+++++r+ivn++aceg er+erhe +kWr+r+++aGF+++pl ++++ ++ +l++++ + yr+ee++g+l+lgW
Gorai.009G184100.1 447 DVACPRDDKQRINAEQHCVARDIVNMIACEGPERVERHELHGKWRSRFMMAGFSQYPLISSVTVAVRDMLKEYDHN-YRLEEREGALYLGW 536
**************************************************************************66.************** PP
GRAS 363 kdrpLvsvSaWr 374
+r++ ++SaWr
Gorai.009G184100.1 537 VNRAMATFSAWR 548
***********8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 549 aa
Download sequence Send
to blast |
MRTSPKHQNP ATIRGLYDQP VKENDPFYLS RIQMLDNNAC SDTGVQGTNV SFQTCKDQVF 60
TLESSMAGAG FVAYDSPSAV SISSSRSPFS PHGSQSCLSD PRPSPENTYG SPYSGSSVVD 120
DSNKLKHKLR ELELSLLGPE SNTVDSCNGC FITGDHQAAS MASFNCAQLV DLVPKFNLKQ 180
ILVACGQALH DDDMLTVTGL MHVLEKMVSV SGEPIQRLGA YVLEGLRARL ESSGSNIYRA 240
LKCKEPTSSE LMSYMHILFR ICPYWKFAYT SGNVVIKEVL EYEGKIHIID FQIAQGTQWM 300
FLIAALAKRP GGPPSIRITG IDDSQSNHAR GGGLHIVGQR LSEFAWSYNV SFEFHDAAMS 360
GCEIQLEHLK VQPGEALAVN LPYVLHHMPD ESVSIWNHRD RLLRLVKSLS PKVVTLTEQE 420
SNTNTSPFFS RYLETLDYYS AMFESIDVAC PRDDKQRINA EQHCVARDIV NMIACEGPER 480
VERHELHGKW RSRFMMAGFS QYPLISSVTV AVRDMLKEYD HNYRLEEREG ALYLGWVNRA 540
MATFSAWR*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
