PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G197000.1
Common NameB456_009G197000, LOC105770994
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 310aa    MW: 33522.6 Da    PI: 6.8231
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G197000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box248.2e-08443538
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                         C+ ++++e++ fC+ ++  lC+ C    H+       H+
  Gorai.009G197000.1  4 QCDVCNKEEASVFCTADEAALCDACDHRVHHAnklaskHQ 43
                        7**************************9964446666676 PP
2zf-B_box28.43.3e-095593238
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                        + + C+ ++ek++ lfC++++  lC+dC + +H    Ht
  Gorai.009G197000.1 55 QIPLCDICQEKRAFLFCQQDRAILCRDCDVPIHAAneHT 93
                        6689*****************************556776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.263147IPR000315B-box-type zinc finger
CDDcd000211.63E-7347No hitNo description
PfamPF006436.6E-6443IPR000315B-box-type zinc finger
SMARTSM003365.5E-8447IPR000315B-box-type zinc finger
PROSITE profilePS5011910.15354101IPR000315B-box-type zinc finger
SMARTSM003363.2E-1454101IPR000315B-box-type zinc finger
PfamPF006432.7E-75694IPR000315B-box-type zinc finger
CDDcd000219.09E-1157101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MKIQCDVCNK EEASVFCTAD EAALCDACDH RVHHANKLAS KHQRFSLLHP SSSKQIPLCD  60
ICQEKRAFLF CQQDRAILCR DCDVPIHAAN EHTKKHNRFL LTGVKLSPTT AIYTSSSSSS  120
VASLSNLGHS VPEFKSQQSV KNSVSASTPN LNSTSLAKSS SISTTSAAVT NNKSGGDNLL  180
ASVEGGSASS ISEYLIEMLP GWHVEDFLDS SSPSFGFCKS DDCMLPFLDA DLESNMTTSS  240
PESLGLLVPQ SPYSLYPPQY SSQMGGQSGL KETNEIIGMK ANRRPVDDSF TVPWISPQST  300
SSKRSKRLW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447834.10.0PREDICTED: B-box zinc finger protein 21-like
SwissprotQ9LQZ75e-92BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A0D2S4I90.0A0A0D2S4I9_GOSRA; Uncharacterized protein
STRINGGorai.009G197000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54002748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.18e-83salt tolerance homolog2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  3. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  4. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  5. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  6. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  7. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]