PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G207400.8
Common NameB456_009G207400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 241aa    MW: 27350.7 Da    PI: 6.5965
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G207400.8genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.54.4e-17341091394
                         TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                         +++l +p kfa+++ +k   + t+t++ +sg  W++ l  +  +++ ++ +GW++Fv ++ L+e+D ++Fk++g s f   v
  Gorai.009G207400.8  34 LHQLEIPEKFAKNIRKK--LPETVTVKGPSGIIWDLGL--TADGDTLFFNDGWRNFVLDHSLEENDLLIFKYNGLSHF--DV 109
                         5789*******888755..8889***************..99999**************************9986776..44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-2121113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.78922115IPR003340B3 DNA binding domain
CDDcd100171.90E-1824112No hitNo description
Gene3DG3DSA:2.40.330.101.6E-1924113IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-1425115IPR003340B3 DNA binding domain
PfamPF023626.0E-1435107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGDSSEDCRS REEEIFWTHF QCIHFSQFLR GDFLHQLEIP EKFAKNIRKK LPETVTVKGP  60
SGIIWDLGLT ADGDTLFFND GWRNFVLDHS LEENDLLIFK YNGLSHFDVL MFEGQSLCEK  120
GSSYFVRKCV HPESENGYQN KRKIDENPDE IVHKSSQCGL ESSPEKSTNN DIGTAPSRGP  180
INSAPTNKKM RYAGSSTKSI YARHLGGKER CTFPGEVRFE TGRVEALLET FSVHKTCFPR  240
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.22410.0flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487409360.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445062.11e-166PREDICTED: B3 domain-containing protein REM16-like isoform X3
TrEMBLA0A0D2TT171e-179A0A0D2TT17_GOSRA; Uncharacterized protein
STRINGGorai.009G207400.11e-165(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-45B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]