PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G207800.1

Common Name

B456_009G207800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 222aa MW: 22491.9 Da PI: 5.1775

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G207800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	73.4	3.1e-23	26	78	3	55
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggr 55 ++ l+cprCdstntkfCyynny+lsqPryfCka +r G+ v v +++ Gorai.009G207800.1 26 TEPLPCPRCDSTNTKFCYYNNYNLSQPRYFCKASKRSRCSSGSSPSVAVSSSS 78 57899********************************9999999999888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.2E-20	28	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	19.507	29	83	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	9.0E-8	33	55	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MPADSGDRRQ VAVPGTMASH PPPKLTEPLP CPRCDSTNTK FCYYNNYNLS QPRYFCKASK 60 RSRCSSGSSP SVAVSSSSSV THEAESAPMV VNPTPLMPGL GIKPEMGLAD VNLNETVDLP 120 VNGGFTSFLN SQGEGYLTLG GYGFGAGSGF DGVWAYPGNG YLGGFSGRGG GDGSGGAVGG 180 NNTGCNTWQA TSDVEGGGGL SDGECFGWPG LAISAPGKGL K*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445332.1	1e-116	PREDICTED: dof zinc finger protein DOF1.6-like
TrEMBL	A0A0D2TNE6	1e-157	A0A0D2TNE6_GOSRA; Uncharacterized protein
STRING	Gorai.009G207800.1	1e-158	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9465	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	2e-10	OBF binding protein 1

Link Out ? help Back to Top
Phytozome	Gorai.009G207800.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]