PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G208900.1

Common Name

B456_009G208900, LOC105769181

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 245aa MW: 27507.5 Da PI: 8.6451

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G208900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59	1.1e-18	35	80	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v+++G+++W++I+r++ gR++k+c++rw + Gorai.009G208900.1 35 KGPWSAEEDRILTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 80 79***************************9.*********985 PP
2	Myb_DNA-binding	52.9	8.6e-17	89	131	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed+ ++ a++++G++ W+tIar ++ gRt++ +k++w++ Gorai.009G208900.1 89 PFSQAEDDTILAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 131 79****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.326	30	85	IPR017930	Myb domain
SuperFamily	SSF46689	1.69E-31	33	128	IPR009057	Homeodomain-like
SMART	SM00717	7.2E-17	34	83	IPR001005	SANT/Myb domain
Pfam	PF00249	8.5E-18	35	80	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-24	36	88	IPR009057	Homeodomain-like
CDD	cd00167	7.17E-15	37	79	No hit	No description
SMART	SM00717	1.0E-14	86	134	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.247	87	136	IPR017930	Myb domain
Pfam	PF00249	5.2E-14	89	131	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-22	89	135	IPR009057	Homeodomain-like
CDD	cd00167	9.75E-11	89	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MEAVNGCSSS TSSSDASSSD SYLSARGSNR AEKIKGPWSA EEDRILTRLV ERYGPRNWSL 60 ISRYIKGRSG KSCRLRWCNQ LSPNVEHRPF SQAEDDTILA AHARYGNRWA TIARLLPGRT 120 DNAVKNHWNS TLKRRAREGQ HHHQQQQQQE HQQQILRVTH QPMDGGDHCA LGSTEVMIEE 180 EALTALTLAP PGSGVSSRSA VVVAERRREE RVPAEFWDVM RDVIAREVRE YMSSTLSAET 240 SAFH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	9e-42	32	136	1	105	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393793	1e-131	GQ393793.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0758 SSR marker CGR5849 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012445103.1	0.0	PREDICTED: myb-related protein A-like
TrEMBL	A0A0D2S5A3	0.0	A0A0D2S5A3_GOSRA; Uncharacterized protein
STRING	Gorai.009G208900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14553	11	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	8e-58	myb domain protein 73

Link Out ? help Back to Top
Phytozome	Gorai.009G208900.1
Entrez Gene	105769181

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]