PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G214200.1
Common NameB456_009G214200, LOC105771438
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 216aa    MW: 24926.3 Da    PI: 9.9439
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G214200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.82.8e-2178137357
                         --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         +R+++t+eq+ +Le l++   r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  Gorai.009G214200.1  78 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEKITAQLgkygKIEGKNVFYWFQNHKARERQ 137
                         7*****************99**************************************97 PP
2Wus_type_Homeobox117.75.2e-3878138464
   Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                         tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqk
  Gorai.009G214200.1  78 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEKITAQLGKYGKIEGKNVFYWFQNHKARERQK 138
                         8***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.07473138IPR001356Homeobox domain
SuperFamilySSF466891.88E-1273143IPR009057Homeodomain-like
SMARTSM003893.0E-775142IPR001356Homeobox domain
PfamPF000466.1E-1978137IPR001356Homeobox domain
CDDcd000869.20E-578139No hitNo description
Gene3DG3DSA:1.10.10.601.0E-779137IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MKVHQLARGF WEHEPSLSLG CKRLRPLAPK LQQHTSSTDT VSSFDLKSFI RPESGPRKLG  60
PSDQKRDSPQ VETHPGGTRW NPTQEQIGIL EMLYRGGMRT PNAQQIEKIT AQLGKYGKIE  120
GKNVFYWFQN HKARERQKMK RNSLGLTNCP RNSPPITTIT LDTRMEIMER SDEDSPYKRK  180
CKSWSFEYLD EQSISPCKEQ ENRTLELFPL HPEGR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448361.11e-161PREDICTED: WUSCHEL-related homeobox 4-like
RefseqXP_016687771.11e-161PREDICTED: WUSCHEL-related homeobox 4-like
SwissprotQ6X7J98e-76WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A0D2QKM41e-159A0A0D2QKM4_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JBT51e-159A0A1U8JBT5_GOSHI; WUSCHEL-related homeobox 4-like
STRINGGorai.009G214200.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59802747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.13e-78WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  4. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  5. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  6. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]