PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G214200.2
Common NameB456_009G214200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 173aa    MW: 19743.6 Da    PI: 10.8943
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G214200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.51.8e-2178137357
                         --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         +R+++t+eq+ +Le l++   r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  Gorai.009G214200.2  78 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEKITAQLgkygKIEGKNVFYWFQNHKARERQ 137
                         7*****************99**************************************97 PP
2Wus_type_Homeobox118.43.3e-3878138464
   Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                         tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqk
  Gorai.009G214200.2  78 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEKITAQLGKYGKIEGKNVFYWFQNHKARERQK 138
                         8***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.07473138IPR001356Homeobox domain
SuperFamilySSF466891.15E-1273143IPR009057Homeodomain-like
SMARTSM003893.0E-775142IPR001356Homeobox domain
CDDcd000864.12E-578139No hitNo description
PfamPF000463.9E-1978137IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.5E-879137IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MKVHQLARGF WEHEPSLSLG CKRLRPLAPK LQQHTSSTDT VSSFDLKSFI RPESGPRKLG  60
PSDQKRDSPQ VETHPGGTRW NPTQEQIGIL EMLYRGGMRT PNAQQIEKIT AQLGKYGKIE  120
GKNVFYWFQN HKARERQKMK RNSLGLTNCP RNSPPITTIT LDTRVHQRPL VY*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448361.11e-120PREDICTED: WUSCHEL-related homeobox 4-like
RefseqXP_016687771.11e-120PREDICTED: WUSCHEL-related homeobox 4-like
SwissprotQ6X7J92e-65WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A0D2S5Q81e-126A0A0D2S5Q8_GOSRA; Uncharacterized protein
STRINGGorai.009G214200.11e-119(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.19e-68WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  4. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  5. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  6. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]