PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G218800.2
Common NameB456_009G218800, LOC105769412
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 224aa    MW: 24720 Da    PI: 8.1999
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G218800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.42.2e-282103197
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C + Cvl+  +     p++q +++ +++k+FG+s +l+l++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++
  Gorai.009G218800.2   2 SCNGCRVLRKGCRETCVLRSSLrwiesPEAQGNATLFLAKFFGRSDLLSLISSVPESQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWH 92 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelall 97 
                         ++q++++++l+
  Gorai.009G218800.2  93 ICQAAVDTVLR 103
                         ****9998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.3241107IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSCNGCRVLR KGCRETCVLR SSLRWIESPE AQGNATLFLA KFFGRSDLLS LISSVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHICQAAVDT VLRGGSLRPV SEISAGVWRP  120
SCDESSDRFC GDESYHFPSR YAESNPLMRM MMMDNQSASA ASDLSLSLTT TKSGNGRRAG  180
RRYEEEKKKA KTMSMYSEES EITASESNEY EGRQERKILK LFV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445483.11e-164PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN231e-65LBD38_ARATH; LOB domain-containing protein 38
SwissprotQ9SZE81e-65LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A0D2URR61e-163A0A0D2URR6_GOSRA; Uncharacterized protein
STRINGGorai.009G218800.11e-163(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.13e-65LOB domain-containing protein 39
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]