PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G223100.1
Common NameB456_009G223100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 228aa    MW: 25465.9 Da    PI: 8.4269
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G223100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.45.1e-131061362656
                         -HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  26 saeereeLAkklgLterqVkvWFqNrRakek 56 
                         s+++++ LA++l+L  rqV vWFqNrRa+ k
  Gorai.009G223100.1 106 SRKQKQGLAEQLNLRPRQVEVWFQNRRARTK 136
                         899**************************98 PP
2HD-ZIP_I/II91.78.3e-301041702390
         HD-ZIP_I/II  23 kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           + ++K+ la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++lkeen+rL+ke +eL+ +
  Gorai.009G223100.1 104 VCSRKQKQGLAEQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLKEENKRLHKELQELK-S 170
                         446799***********************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.003388142IPR001356Homeobox domain
SuperFamilySSF466894.28E-11103146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-12104136IPR009057Homeodomain-like
PfamPF000461.5E-10105136IPR001356Homeobox domain
CDDcd000863.43E-9106139No hitNo description
PROSITE profilePS5007112.746106138IPR001356Homeobox domain
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
PfamPF021832.3E-9138171IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.7E-20138181IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGLDDICNTG LCLGLGIGCL VKQENISQSD HHQQKKKKPF LKHDQLFPSL SLGPSHDVHG  60
HGESIDLHQR QASSLSLSAV SSFSNSSVKR ERDFGGEEVE LERVCSRKQK QGLAEQLNLR  120
PRQVEVWFQN RRARTKLKQT EVDCELLKKC CETLKEENKR LHKELQELKS LKLTASYYMH  180
LPAATLTLCP SCERVDNGGE APSTSSPFTM GKKSHFFSSY THPSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016687248.11e-146PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-58HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A0D2TPA11e-167A0A0D2TPA1_GOSRA; Uncharacterized protein
STRINGGorai.009G223100.11e-167(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2233535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-54HD-ZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]