PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G231800.1

Common Name

B456_009G231800, LOC105770641

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 256aa MW: 27536.5 Da PI: 7.4365

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G231800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	103.7	1.2e-32	56	111	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eC+kNhA+s+Ggha+DGCgEfm++ g+egt +alkCaAC+CHRnFHR+e++ Gorai.009G231800.1 56 GIRYRECQKNHAVSIGGHALDGCGEFMAA-GDEGTLDALKCAACNCHRNFHRKETDG 111 689***********************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-22	56	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	6.3E-30	57	109	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.4E-29	58	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.313	59	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	4.28E-21	179	253	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.4E-32	182	254	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	6.7E-28	192	249	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MDFEEHDDQD EEMGMAVPAG YDSLGNSSAP RSKIGPAASG GEGAAASAPP RKVGSGIRYR 60 ECQKNHAVSI GGHALDGCGE FMAAGDEGTL DALKCAACNC HRNFHRKETD GEGSSIYNPH 120 HHHHHYQQHP QFSPYYRAPP PAGYLHLTPQ QRPLALPAAS GGGIAGGYSR EDEDVSNPSS 180 SAGGGGGSGG LKKRFRTKFT PEQKDKMLGF AERLGWRIQK HDEAAVEQFC EETGVKRQVL 240 KVWMHNNKYT LGKKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	5e-30	193	248	18	73	ZF-HD homeobox family protein
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447377.1	0.0	PREDICTED: zinc-finger homeodomain protein 2-like
Refseq	XP_012447378.1	0.0	PREDICTED: zinc-finger homeodomain protein 2-like
Swissprot	Q9SB61	6e-79	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A0D2S6S4	0.0	A0A0D2S6S4_GOSRA; Uncharacterized protein
TrEMBL	A0A2P5S7E6	0.0	A0A2P5S7E6_GOSBA; Uncharacterized protein
STRING	Gorai.009G231800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4505	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-72	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Gorai.009G231800.1
Entrez Gene	105770641

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]