PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G233000.1
Common NameB456_009G233000, LOC105770908
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 338aa    MW: 37313 Da    PI: 6.0013
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G233000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.62e-12137188155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ +r+l+P +   + ++ + a+i   A++++k+L+
  Gorai.009G233000.1 137 QRMTHIAVERNRRKQMNEYLAAIRSLMPAS---YVQRGDQASIIGGAINFVKELE 188
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.1E-13135192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-12135192No hitNo description
PROSITE profilePS5088814.678136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-15136200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-10137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-9142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.726261337IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MALEAVVYPP DRFTYGFKDI FPVAGGGGGA WGYDFCFQDE DKVLPVILET NLQQQGSHAN  60
WDSSSTSVMQ QQHAKELWDP YSSSPETCTV DQSLPGPAAG FQAPIEPPPA YTATNGGGRR  120
KRRRTRSSKN KEELENQRMT HIAVERNRRK QMNEYLAAIR SLMPASYVQR GDQASIIGGA  180
INFVKELEQL LQTMEAHKWT TQHPEHNGDP SPFAEFFAFP QFSTRATSHC NNSPSSMAAD  240
QPMAAESVAD IEVTMVETHA NLKILSKKRP RQLLKLVAGL QSLSLTILHL NVSTVDEMAL  300
YSISVKVEEG CHLNTVDEIA AAVNQMLRSI QEEAAFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119123RKRRR
2119124RKRRRT
3137148RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447728.10.0PREDICTED: transcription factor bHLH96
SwissprotQ9C7T43e-96BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0D2QLU70.0A0A0D2QLU7_GOSRA; Uncharacterized protein
STRINGGorai.009G233000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-95bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]