PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G251800.1
Common NameB456_009G251800, LOC105769768
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 555aa    MW: 61664.9 Da    PI: 4.8429
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G251800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS447.87.3e-1371865543374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         + L+ecA ++++g+ e a+a++++l++l+s +gdp qR+aay++e+Laar+a s++ lykal+++e +   ss++laa+++++ev+P++kf
  Gorai.009G251800.1 186 QMLIECAAVLAEGNIEGASAIINELRQLVSIHGDPPQRIAAYMVEGLAARVAASGKYLYKALRCKEPP---SSDRLAAMQILFEVCPCFKF 273
                         79*****************************************************************9...9******************* PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                         ++++aN aI ea++ e+rvHiiDfdi+qG Q+++L+q++a+ p++pp+lR+Tgv++p+s+   +  l+ +g rL+k+Ae lgv+fef++ v
  Gorai.009G251800.1 274 GFMAANGAIIEAFKAEKRVHIIDFDINQGSQYITLIQSIAKLPGKPPHLRLTGVDDPDSVqrLNGGLQIIGLRLEKLAEVLGVSFEFQA-V 363
                         **********************************************************99777889***********************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         a+r++ +++++L+++pgEal+Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++F+ rf+ea +yys++f+sl++
  Gorai.009G251800.1 364 ASRTSLVTPSMLDCRPGEALVVNFAFQLHHMPDESVSTINQRDQLLRMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYSYYSTVFESLDV 454
                         ******************************************************************************************* PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                         +lpres++r++vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF++ p+s ++ + ++ l+r++ ++ y+++e+ g+l +gW+d
  Gorai.009G251800.1 455 TLPRESQDRMNVERQCLARDIVNIVACEGEERIERYEVAGKWRARMTMAGFTSCPMSPNVIDMIRKLIREYCDR-YKLKEDLGALHFGWED 544
                         ************************************************************************66.**************** PP

                GRAS 365 rpLvsvSaWr 374
                         ++L+++SaWr
  Gorai.009G251800.1 545 KSLIVASAWR 554
                         *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.035158535IPR005202Transcription factor GRAS
PfamPF035142.5E-134186554IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MSLVTSTEPA ITACRNTKLY SVQGSGDSSG LSTQMFGSDK HKPRCITDSY SSESYEKLFV  60
GSPSEELMHP SSSDVSESSI RQQDVSSYQP RDYLEVQSAD TLDDDTDKMK LMLQELERDL  120
LGDNDVDVGD MFGTGLNMEI DGEWSGPVRT EPIHEPPKES SSSESNLSSI SSNKEASHFS  180
SRTPKQMLIE CAAVLAEGNI EGASAIINEL RQLVSIHGDP PQRIAAYMVE GLAARVAASG  240
KYLYKALRCK EPPSSDRLAA MQILFEVCPC FKFGFMAANG AIIEAFKAEK RVHIIDFDIN  300
QGSQYITLIQ SIAKLPGKPP HLRLTGVDDP DSVQRLNGGL QIIGLRLEKL AEVLGVSFEF  360
QAVASRTSLV TPSMLDCRPG EALVVNFAFQ LHHMPDESVS TINQRDQLLR MVKSLNPKLV  420
TVVEQDVNTN TSPFFPRFIE AYSYYSTVFE SLDVTLPRES QDRMNVERQC LARDIVNIVA  480
CEGEERIERY EVAGKWRARM TMAGFTSCPM SPNVIDMIRK LIREYCDRYK LKEDLGALHF  540
GWEDKSLIVA SAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6419055325378Protein SCARECROW
5b3h_A2e-6419055324377Protein SCARECROW
5b3h_D2e-6419055324377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446082.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0D2TV740.0A0A0D2TV74_GOSRA; Uncharacterized protein
STRINGGorai.009G251800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]