PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G255400.1
Common NameB456_009G255400, LOC105771225
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 415aa    MW: 44717.1 Da    PI: 6.924
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G255400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.7e-20190239255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a++k++g
  Gorai.009G255400.1 190 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALKFRG 239
                         7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-33190248IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23190248IPR016177DNA-binding domain
SMARTSM003802.9E-38190253IPR001471AP2/ERF domain
PfamPF008473.0E-14190239IPR001471AP2/ERF domain
PROSITE profilePS5103225.791190247IPR001471AP2/ERF domain
PRINTSPR003671.1E-11191202IPR001471AP2/ERF domain
CDDcd000187.66E-16198249No hitNo description
PRINTSPR003671.1E-11213229IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MCLIDKVAHR GGSSGYARFP PAGDAGGADE QQEYYSQSSR NRQVNQAMMQ QRNQGVMFLG  60
SQSQASEMST MVSALAHVMS GQRAGDWGYG GNVAGEVSSG FGLSGPSADS PSASGLWIGQ  120
KRGREDEASA QLVESAAPRV QRSFADFRGS HADSSSAATS VAEETTSIVA PAAETAAAAA  180
YEETGERRRR YRGVRQRPWG KWAAEIRDPH KAARVWLGTF DTAEAAARAY DEAALKFRGS  240
RAKLNFPELV RLAPQPMQNF PATQTSVSSS LTTQFRPPYS TPLPSLYQSQ HLHSPTADML  300
RDYWQYSQLL QSSTDFHGQE ATSLMEQMMQ SSQLPNFQHP FLSSSLSPFP SSFVAPSAAA  360
SSSSSSSASF PLVFGEHQQF DVFRQPSNQS QASGSDFPVP PWSHPSHYPS STGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22191250666ATERF1
3gcc_A2e-22191250666ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185190ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5823872e-44JX582387.1 Gossypium hirsutum clone NBRI_GE15207 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448089.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A0D2TR960.0A0A0D2TR96_GOSRA; Uncharacterized protein
STRINGGorai.009G255400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15224819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-20ethylene response factor 110
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]