PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G273300.1
Common NameB456_009G273300, LOC105765769
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 95aa    MW: 10796.2 Da    PI: 8.8964
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G273300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding384e-12652347
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                        +WT+   +l+ +a + + ++   +W++ ar +g g+t +++k+++q++
  Gorai.009G273300.1  6 NWTPKQNKLFENALAIYDKDtpdRWHKLARAVG-GKTVEEVKLHYQNL 52
                        8********************************.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.015257IPR017884SANT domain
SMARTSM007178.2E-10355IPR001005SANT/Myb domain
SuperFamilySSF466896.06E-14561IPR009057Homeodomain-like
CDDcd001671.08E-8653No hitNo description
PfamPF002498.1E-9652IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-5656IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MASGSNWTPK QNKLFENALA IYDKDTPDRW HKLARAVGGK TVEEVKLHYQ NLVDDIKQIE  60
SGHVPLPPYK KAGGNQGYNN FMDDEEPRMR NLRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-32394792RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440477.16e-66PREDICTED: protein RADIALIS-like 3
RefseqXP_016684660.16e-66PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB82e-33RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A0D2TSD61e-64A0A0D2TSD6_GOSRA; Uncharacterized protein
TrEMBLA0A1U8J2U31e-64A0A1U8J2U3_GOSHI; protein RADIALIS-like 3
STRINGGorai.009G273300.12e-65(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-35RAD-like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]