PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G275100.1
Common NameB456_009G275100, LOC105765908
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 214aa    MW: 23823.6 Da    PI: 10.0843
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G275100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-183782147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W++eEd +l + v+++G+++W++I+r++  gR++k+c++rw + 
  Gorai.009G275100.1 37 KGPWSAEEDRILTRFVEKYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 82
                        79*****************************9.***********985 PP
2Myb_DNA-binding50.54.8e-1691133347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++++ Ede ++ a++++G++ W+tIar +  gRt++ +k++w++ 
  Gorai.009G275100.1  91 PFSQAEDETILAAHARFGNR-WATIARLLH-GRTDNAVKNHWNST 133
                         79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.6333287IPR017930Myb domain
SuperFamilySSF466894.67E-3135130IPR009057Homeodomain-like
SMARTSM007177.4E-173685IPR001005SANT/Myb domain
PfamPF002491.2E-173782IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-243890IPR009057Homeodomain-like
CDDcd001671.69E-143981No hitNo description
SMARTSM007173.1E-1388136IPR001005SANT/Myb domain
PROSITE profilePS5129419.3389138IPR017930Myb domain
CDDcd001673.69E-991134No hitNo description
Gene3DG3DSA:1.10.10.602.9E-2291137IPR009057Homeodomain-like
PfamPF002494.9E-1391133IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEAVNGCSSS SSCDTSSSSS SKSSLSAMAS SKSEKIKGPW SAEEDRILTR FVEKYGPRNW  60
SLISRYIKGR SGKSCRLRWC NQLSPSVEHR PFSQAEDETI LAAHARFGNR WATIARLLHG  120
RTDNAVKNHW NSTLKRKAKE SKQQQQRKEQ ISMSTYQQMD EEALSTSLTL APPGSGTASV  180
AERRISVSAE LWDVMRDVVA REVREYMSST SSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-42341381105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591562e-43AJ459156.1 Gossypium hirsutum partial myb127 gene, clone pGhMYB127.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440639.11e-156PREDICTED: transcriptional activator Myb-like
TrEMBLA0A0D2TSP61e-154A0A0D2TSP6_GOSRA; Uncharacterized protein
STRINGGorai.009G275100.11e-155(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145531122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-58myb domain protein 73
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]