PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G276100.1
Common NameB456_009G276100, LOC105771079
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 355aa    MW: 38806 Da    PI: 10.2598
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G276100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.5e-30282339359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D+y+WrKYGqK++kgs++pr+YYrC+s  gCp++k+ver+ ++p ++++tYe +Hnh+
  Gorai.009G276100.1 282 DEYSWRKYGQKPIKGSPHPRGYYRCSSVkGCPARKHVERALDEPMMLIVTYEADHNHR 339
                         9*************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.0E-16233278IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.3E-32268339IPR003657WRKY domain
PROSITE profilePS5081129.677275338IPR003657WRKY domain
SuperFamilySSF1182901.02E-25276340IPR003657WRKY domain
SMARTSM007743.9E-35280340IPR003657WRKY domain
PfamPF031066.5E-26282339IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MTVELKMVYG GDGGGSFARK VVETALKEAA NSGIQGVEEL ITLMSKNQEL FNPDVSIKTA  60
APSGSAESAM DIQAVTDKTV NSFKEVISLL DRPRIGHARF RRAPVLHPEQ DTEQASKKIQ  120
EPETGSSSFQ VTKDQVSAFK PFCSTPSYRL PPLPHSRPQS KRSPPLIAKI GVLERNESPS  180
TINFSSSRTL SAGNSFISSS TGNTDSFQPS GFQFTSPSHV PSSGKPPLFS SLKRKCNSLD  240
GAALKYGSFS RRCHCSKKRK SRLKKVIRVP AISNKTADIP PDEYSWRKYG QKPIKGSPHP  300
RGYYRCSSVK GCPARKHVER ALDEPMMLIV TYEADHNHRH NSTDVSPALI LESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-19268338271WRKY transcription factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310820.0KF031082.1 Gossypium hirsutum WRKY transcription factor 34 (WRKY34) mRNA, complete cds.
GenBankKJ8258740.0KJ825874.1 Gossypium hirsutum WRKY protein 32 (WRKY32) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447937.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-102WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A0D2TW920.0A0A0D2TW92_GOSRA; Uncharacterized protein
STRINGGorai.009G276100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-91WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]