PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G302800.1

Common Name

B456_009G302800, LOC105770866

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 156aa MW: 17707.7 Da PI: 10.1441

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G302800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.1	1.5e-15	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+n+ r++t+ kR++g+lKK +EL +LC++ ++ iifss Gorai.009G302800.1 10 LISNEYARKTTLKKRKAGLLKKLSELTTLCGVAACAIIFSS 50 59**************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	4.58E-19	1	85	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.152	1	50	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.4E-17	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	5.13E-20	2	85	No hit	No description
PRINTS	PR00404	8.2E-6	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.3E-15	11	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-6	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-6	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MGRKATVYEL ISNEYARKTT LKKRKAGLLK KLSELTTLCG VAACAIIFSS YDAQPDVWPS 60 KAEACQVLKK FKSSPAQQRG KNMMDQTVLL KRSILQLNGR LEKRKKKNRE LEKELALAET 120 MAGENNCDWN NLEQLKELDY QLQENIKLIT DKIKS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447675.1	1e-109	PREDICTED: agamous-like MADS-box protein AGL80
Refseq	XP_012447676.1	1e-109	PREDICTED: agamous-like MADS-box protein AGL80
TrEMBL	A0A0D2UW91	1e-108	A0A0D2UW91_GOSRA; Uncharacterized protein
TrEMBL	A0A2P5SIH3	1e-108	A0A2P5SIH3_GOSBA; Uncharacterized protein
STRING	Gorai.009G302800.1	1e-109	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	4e-17	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Gorai.009G302800.1
Entrez Gene	105770866

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]