PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G327300.4
Common NameB456_009G327300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 325aa    MW: 36136 Da    PI: 6.1865
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G327300.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.51.6e-1553102255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h+  E+rRR++iN++f+ Lr+++P+     ++K + a+ L +++eY+++Lq
  Gorai.009G327300.4  53 RSKHSVTEQRRRSKINERFQVLRDIIPNT----DQKRDTASFLLEVIEYVQYLQ 102
                         899*************************8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-2349124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-1849124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.99951101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.39E-1453106No hitNo description
PfamPF000106.7E-1353102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1157107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MRTGKQSQEE EEYEEEEFGS KKQGPSSNQI MSGNAINNSN KGGKNSDKAN AIRSKHSVTE  60
QRRRSKINER FQVLRDIIPN TDQKRDTASF LLEVIEYVQY LQEKVKKYEG SYQEWNSEPA  120
KLMPWRNSHW RVQSFVGQQQ AIKNGSDPGS AFAGKFNENN ININPTMIAS AQNPVESDPV  180
RDTMSKAMDQ QPELGSRGMP LPIQGDNMLV HPLQRPVSEA QPTECFIGND TVNQQEDLTI  240
EGGTINISSV YSEELLNSLT QALQSAGLDL SQANISVQID LGKHANRGLT SGTSAKSAPF  300
QAMTHHRDVS NGEESDHAQK RMKK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448295.10.0PREDICTED: transcription factor BIM2-like isoform X1
SwissprotQ9CAA41e-120BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0D2QS000.0A0A0D2QS00_GOSRA; Uncharacterized protein
STRINGGorai.009G327300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-109BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]