PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G337700.1

Common Name

B456_009G337700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 455aa MW: 51590.9 Da PI: 8.829

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G337700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.9	7.3e-13	276	318	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er+RR++iN+ +++Lr l+Pk + K++ +iL+ A+eYI +L Gorai.009G337700.1 276 VMERNRRKKINDQLFKLRALVPKiS------KMDRTAILTDAIEYIGDL 318 69*******************66......*************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	3.8E-9	18	119	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	3.68E-10	267	323	No hit	No description
SuperFamily	SSF47459	1.44E-14	268	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.081	269	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-12	275	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-14	276	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-10	276	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MIVVTKTMRG FDRAVEWLRP FVDSKGWDFC VVWKLGDDPS RFIEWKDCCC SACFNVNVEK 60 DESQKPFCRD GHFQHSIRSK ACEALSHFPF AISLYAGIHG EVAMSNQPSW VNHGNPSGSQ 120 SSNVMPKDQN LIELVTSQCN AVLKQEITTG ENYAKANLDK CYNLPFSISL STFVPRIELI 180 PPISDSNSHH SLDGSHSGSS PSIEHPPFAS DSAYISQDEQ FKQLIGTYYG TKRLRCSKNV 240 PEQQARFAPD GNKSIKDKTR TTKQPAKEKF HSKNLVMERN RRKKINDQLF KLRALVPKIS 300 KMDRTAILTD AIEYIGDLLE EKKKLENELM KIDEENCEKS NLELKSTLLD KSPKDNMSAV 360 KPNQVSSSLA KMAKMEVHVE VNQLTKREFL IKLYYEHKRG SFAKLMEGID SLGLQVIDAN 420 VTTFNGKVLS MFKVEANRDF QSRKLRDFLT NLTK*

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MIVVTKTMRG FDRAVEWLRP FVDSKGWDFC VVWKLGDDPS RFIEWKDCCC SACFNVNVEK  60
DESQKPFCRD GHFQHSIRSK ACEALSHFPF AISLYAGIHG EVAMSNQPSW VNHGNPSGSQ  120
SSNVMPKDQN LIELVTSQCN AVLKQEITTG ENYAKANLDK CYNLPFSISL STFVPRIELI  180
PPISDSNSHH SLDGSHSGSS PSIEHPPFAS DSAYISQDEQ FKQLIGTYYG TKRLRCSKNV  240
PEQQARFAPD GNKSIKDKTR TTKQPAKEKF HSKNLVMERN RRKKINDQLF KLRALVPKIS  300
KMDRTAILTD AIEYIGDLLE EKKKLENELM KIDEENCEKS NLELKSTLLD KSPKDNMSAV  360
KPNQVSSSLA KMAKMEVHVE VNQLTKREFL IKLYYEHKRG SFAKLMEGID SLGLQVIDAN  420
VTTFNGKVLS MFKVEANRDF QSRKLRDFLT NLTK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017603435.1	0.0	PREDICTED: transcription factor bHLH90 isoform X3
TrEMBL	A0A0D2QSR3	0.0	A0A0D2QSR3_GOSRA; Uncharacterized protein
STRING	Gorai.009G337700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6985	27	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	8e-50	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G337700.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]