PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G355900.1

Common Name

B456_009G355900, LOC105766252

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 192aa MW: 21378.5 Da PI: 4.5447

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G355900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	45.2	1.2e-14	19	65	1	47
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 kri n+ +r vtfskR++g+l KA LS ++ ++ v+i+s++g++y Gorai.009G355900.1 19 KRIPNQKKRWVTFSKRKKGLLSKAARLSSITGEDIGVVIISEQGRFY 65 79*******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.778	11	71	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.3E-15	11	70	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.28E-17	12	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-12	13	33	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.8E-13	20	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-12	33	48	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-12	48	69	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MDEARPGRRG AGRRRIEIKR IPNQKKRWVT FSKRKKGLLS KAARLSSITG EDIGVVIISE 60 QGRFYISDNA DAVIDRYLSI EAGKDNNGDG RNQGIVEDDN IYDGDGLDDG VTLRLFPQEI 120 GQDDDHNDDG RFGNGRVMDK QGLNLNQRDN VWKINDGEIK GENCFMDLNK PPHDDDDDDG 180 AAADDTMIPF L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012441084.1	1e-135	PREDICTED: MADS-box transcription factor 21-like
TrEMBL	A0A0D2TXF9	1e-133	A0A0D2TXF9_GOSRA; Uncharacterized protein
STRING	Gorai.009G355900.1	1e-134	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18369	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17310.1	4e-11	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G355900.1
Entrez Gene	105766252

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]