PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G356100.1

Common Name

B456_009G356100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 95aa MW: 10432 Da PI: 9.7966

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G356100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54.6	1.3e-17	3	50	3	50
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +en + ++ skRr ++KKA ELS+LC+a+va++++s++gk+ ++ Gorai.009G356100.1 3 SENLRGTKIATSKRRCSLFKKAAELSTLCGARVAIVVISKKGKVSMFP 50 67777778889*********************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.2E-6	1	52	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.914	4	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.09E-15	7	67	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.6E-15	10	48	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-8	15	30	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-8	30	51	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MASENLRGTK IATSKRRCSL FKKAAELSTL CGARVAIVVI SKKGKVSMFP DSDTVIHRYI 60 NRKNKEEFMN NEVAEESVDQ SLSDQNLSLT LPAN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022717825.1	1e-24	MADS-box protein AGL72-like
TrEMBL	A0A0D2UYG7	2e-62	A0A0D2UYG7_GOSRA; Uncharacterized protein
STRING	Gorai.009G356100.1	3e-63	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22354	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-12	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Gorai.009G356100.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]