PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G358500.1
Common NameB456_009G358500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 77aa    MW: 8451.93 Da    PI: 8.8782
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G358500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.54e-095572825
                        HHHHHHHHHHHHHHHHHH CS
              SRF-TF  8 nrqvtfskRrngilKKAe 25
                        + +vtfskRrng+lKKA+
  Gorai.009G358500.1 55 QGKVTFSKRRNGLLKKAY 72
                        568**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.7209.2E-11464IPR016040NAD(P)-binding domain
PfamPF001073.4E-7461IPR013149Alcohol dehydrogenase, C-terminal
SuperFamilySSF517357.56E-8461IPR016040NAD(P)-binding domain
SuperFamilySSF554551.16E-55673IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.0685773IPR002100Transcription factor, MADS-box
PfamPF003191.0E-65773IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MACVDVVLDC VGAAYLQRNL VYLNVDGRLF IIGSITEFVA ELNIAAMFEK RFSIQGKVTF  60
SKRRNGLLKK AYDGCS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443307.12e-22PREDICTED: quinone oxidoreductase PIG3-like
TrEMBLA0A0D2TXM08e-48A0A0D2TXM0_GOSRA; Uncharacterized protein
STRINGGorai.009G358500.11e-48(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2504523
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]