PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G367100.1

Common Name

B456_009G367100, LOC105766340

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

YABBY

Protein Properties

Length: 184aa MW: 20768.8 Da PI: 9.1598

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G367100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	181.4	5e-56	7	160	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 s++eq+Cy+ Cn Cn ilav+vP ++lf++vtvrCG Ct+l s+n+a + q +a ++ ++ + ++e ++ ++++ +++ Gorai.009G367100.1 7 SAPEQLCYIPCNLCNIILAVNVPCSCLFETVTVRCGQCTNLCSINMAASFQSRAGKEI--------QVPNYTSSEYRIELGSSSSKGKNKL 89 789****************************************9999888887774........3344444444444443333333333 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++ + +++e v+rPP+kr r+Ps yn+fikeeiqrik +nPdishreafs+aaknWa fP+ihfgl Gorai.009G367100.1 90 PKRPRIMNTTTQER----VVNRPPDKRHRAPSLYNQFIKEEIQRIKLNNPDISHREAFSTAAKNWARFPHIHFGL 160 33333323333333....369**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.6E-63	8	160	IPR006780	YABBY protein
SuperFamily	SSF47095	1.07E-6	100	153	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MSSLNNSAPE QLCYIPCNLC NIILAVNVPC SCLFETVTVR CGQCTNLCSI NMAASFQSRA 60 GKEIQVPNYT SSEYRIELGS SSSKGKNKLP KRPRIMNTTT QERVVNRPPD KRHRAPSLYN 120 QFIKEEIQRI KLNNPDISHR EAFSTAAKNW ARFPHIHFGL MLETATQPKL NDDSTEHFQQ 180 LLK*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ526781	8e-61	HQ526781.1 Gossypium herbaceum clone NBRI_A_1939 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012441201.1	1e-136	PREDICTED: axial regulator YABBY 5-like isoform X2
Swissprot	Q8GW46	2e-74	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A0D2SEH0	1e-134	A0A0D2SEH0_GOSRA; Uncharacterized protein
STRING	Gorai.009G367100.1	1e-135	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	7e-74	YABBY family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G367100.1
Entrez Gene	105766340

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]