PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G367100.5
Common NameB456_009G367100, LOC105766340
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family YABBY
Protein Properties Length: 183aa    MW: 20875.9 Da    PI: 9.7529
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G367100.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY154.78.1e-482115920170
               YABBY  20 tilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevp 110
                          il v+vP ++lf++vtvrCG Ct+l s+n+a + q +a ++         ++ +  ++e  ++   ++++ +++  +  ++ + +++e  
  Gorai.009G367100.5  21 KILQVNVPCSCLFETVTVRCGQCTNLCSINMAASFQSRAGKEI--------QVPNYTSSEYRIELGSSSSKGKNKLPKRPRIMNTTTQER- 102
                         69****************************9999888887774........334444444444444333333333333333323333333. PP

               YABBY 111 rvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                             v+rPP+kr r+Ps yn+fikeeiqrik +nPdishreafs+aaknWa fP+ihfgl
  Gorai.009G367100.5 103 ---VVNRPPDKRHRAPSLYNQFIKEEIQRIKLNNPDISHREAFSTAAKNWARFPHIHFGL 159
                         ...369****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.5E-5321159IPR006780YABBY protein
SuperFamilySSF470951.06E-699152IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MNKDDISSIF STDYLNLFLI KILQVNVPCS CLFETVTVRC GQCTNLCSIN MAASFQSRAG  60
KEIQVPNYTS SEYRIELGSS SSKGKNKLPK RPRIMNTTTQ ERVVNRPPDK RHRAPSLYNQ  120
FIKEEIQRIK LNNPDISHRE AFSTAAKNWA RFPHIHFGLM LETATQPKLN DDSTEHFQQL  180
LK*
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5267818e-61HQ526781.1 Gossypium herbaceum clone NBRI_A_1939 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441207.11e-135PREDICTED: axial regulator YABBY 5-like isoform X4
SwissprotQ8GW463e-62YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A0D2TY161e-134A0A0D2TY16_GOSRA; Uncharacterized protein
STRINGGorai.009G367100.11e-117(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.21e-61YABBY family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]