PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G394400.1

Common Name

B456_009G394400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 249aa MW: 27008.4 Da PI: 9.0652

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G394400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	47.7	5e-15	89	120	26	58
CBFB_NFYA 26 eekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 e+k+ +k+rkpylh SRh hA+rRpRg+gGrF Gorai.009G394400.1 89 LETKV-TKARKPYLHYSRHLHAVRRPRGNGGRF 120 57899.9*************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51152	17.1	54	123	IPR001289	Nuclear transcription factor Y subunit A
SMART	SM00521	1.1E-9	80	123	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.3E-12	89	120	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
INQKNHTRIN SQESDCKDSG DEPMLKAVIP RQQSLQSEHG LGQPMVCAKY PYLMDQGYGV 60 FPTFGPQISG RVMLPLNLAT EDGPIYAALE TKVTKARKPY LHYSRHLHAV RRPRGNGGRF 120 LNTKSSNTGK DGMEMMKANE GQLSRLTGSQ ISQVLQSDSG TINSYKEPNG GSSTFSGSEV 180 SSSMYSRGDL SKGIGGDSVS HFPCNNQRDQ VSVARQIILG SSHLKLFFTT LNAIALEGVV 240 EDAQLNLV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016700003.1	1e-134	PREDICTED: nuclear transcription factor Y subunit A-10-like
Refseq	XP_016702219.1	1e-134	PREDICTED: nuclear transcription factor Y subunit A-10-like
TrEMBL	A0A0D2SFL4	0.0	A0A0D2SFL4_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.009G394400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.3	2e-31	nuclear factor Y, subunit A10

Link Out ? help Back to Top
Phytozome	Gorai.009G394400.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]