PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G406800.1
Common NameB456_009G406800, LOC105767791
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 214aa    MW: 23449.4 Da    PI: 6.5235
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G406800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.52.2e-154997255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ykGVr++  + +Wv+e+r+p   +k+ r++lg+f ++ +Aaka++aa++ l+g
  Gorai.009G406800.1 49 IYKGVRRR--NEKWVSEVREP---NKKSRIWLGTFSSPVMAAKAYDAAALTLKG 97
                        69***854..68*****9998...347**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.5E-104897IPR001471AP2/ERF domain
CDDcd000185.70E-1748107No hitNo description
PROSITE profilePS5103218.41349105IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1749107IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.9E-2649107IPR001471AP2/ERF domain
SMARTSM003803.6E-2749111IPR001471AP2/ERF domain
PRINTSPR003671.8E-65061IPR001471AP2/ERF domain
PRINTSPR003671.8E-687107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKHISVLSSK DHENPCSAPE PGSSSGNVEV QSQKRKAGRK KFQETRHPIY KGVRRRNEKW  60
VSEVREPNKK SRIWLGTFSS PVMAAKAYDA AALTLKGVSA SLNFPDSAYA LPRAKSSSIS  120
DIQSAAMQAA SEGFGDHAKA SSPLPFLSSY PPPLSCSESS KILFVDEEEV FNMPGILDSM  180
AEGLILTPPA MQKGYYYWED DLDDFVELNL WGD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442810.11e-157PREDICTED: dehydration-responsive element-binding protein 1B-like
TrEMBLA0A0D2U2P71e-156A0A0D2U2P7_GOSRA; Uncharacterized protein
STRINGGorai.009G406800.11e-156(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-42C-repeat-binding factor 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]