PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G409600.1
Common NameB456_009G409600, LOC105767813
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 227aa    MW: 26472.3 Da    PI: 9.4468
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G409600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61.1e-1863116356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k+ ++t+eqle Le  F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
  Gorai.009G409600.1  63 KKKRLTNEQLEWLEMSFQEDIKLDPQRKMKLSRELGLQPRQIAVWFQNRRARWK 116
                         56679************************************************9 PP
2HD-ZIP_I/II1093.4e-3562154193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekk+rl++eq++ LE+sF+e+ kL+p+rK++l+reLglqprq+avWFqnrRAR+k+k+lE+ ++aL++++  +++e+++L++ev++L++ l
  Gorai.009G409600.1  62 EKKKRLTNEQLEWLEMSFQEDIKLDPQRKMKLSRELGLQPRQIAVWFQNRRARWKAKELERLCHALQHHLHLVSKETQKLQHEVSKLKAML 152
                         69**************************************************************************************988 PP

         HD-ZIP_I/II  92 ke 93 
                         +e
  Gorai.009G409600.1 153 RE 154
                         75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.28158118IPR001356Homeobox domain
SuperFamilySSF466892.31E-1760119IPR009057Homeodomain-like
SMARTSM003891.1E-1560122IPR001356Homeobox domain
CDDcd000863.69E-1663119No hitNo description
PfamPF000464.4E-1663116IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-1964122IPR009057Homeodomain-like
PRINTSPR000313.9E-58998IPR000047Helix-turn-helix motif
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PRINTSPR000313.9E-598114IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEWNGTLSFV PGQPPSLTSL YNYNYDQYSP GMEMMNVGLA EAEAMEKKKK KKKKKIYMNN  60
EEKKKRLTNE QLEWLEMSFQ EDIKLDPQRK MKLSRELGLQ PRQIAVWFQN RRARWKAKEL  120
ERLCHALQHH LHLVSKETQK LQHEVSKLKA MLREQATRNQ VSTGYTEISG EETIESTLIH  180
CSNKPMVVPN NHHPIADHCS YLFNVDKHNP NPVGSTYWGE QLPTNP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14654KKKKKKKKK
24854KKKKKKK
34865KKKKKKKIYMNNEEKKKR
45165KKKKIYMNNEEKKKR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147861e-157JX614786.1 Gossypium hirsutum clone NBRI_GE58425 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442838.11e-170PREDICTED: homeobox-leucine zipper protein ATHB-22-like
SwissprotQ9LZR03e-44ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A0D2SGJ81e-169A0A0D2SGJ8_GOSRA; Uncharacterized protein
STRINGGorai.009G409600.11e-169(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2846333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.15e-37homeobox 51
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  3. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]