PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G412900.1

Common Name

B456_009G412900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 253aa MW: 27533.8 Da PI: 7.1438

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G412900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00014	170	192	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Gorai.009G412900.1 170 HECSICGAEFSSGQALGGHMRRH 192 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.3E-10	100	125	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.28E-9	100	123	No hit	No description
PROSITE profile	PS50157	9.182	101	128	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.45	101	123	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	103	123	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.28E-9	165	192	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.9E-4	166	192	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	5.0E-13	169	193	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	170	192	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.868	170	197	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	172	192	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MEGQQEVVLC KDELQIIKGK RTKRPRPVSS LTLAIASTTT TSTGGESRTS NDDSSITTAV 60 EPPESCWEDE ENMAYCLMLL AQGQTRKPSE PTGKTAGMNV HQCKTCNRCF PSFQALGGHR 120 ASHKKPKLHS EENTKRLKLV KEDDDMNTTL SLQITNKAPA LCNGTKSKVH ECSICGAEFS 180 SGQALGGHMR RHRTSTNATT TVGTSTSAET EDLSSNKPTT VLQLDLNLPA PEDDRHNESN 240 FPFTQTINLC YC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	22	26	KRPRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012442995.1	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A0D2U2Z5	0.0	A0A0D2U2Z5_GOSRA; Uncharacterized protein
STRING	Gorai.009G412900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24980	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	6e-44	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G412900.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]