PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G413600.2
Common NameB456_009G413600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 237aa    MW: 27430.3 Da    PI: 5.6919
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G413600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.5e-181764148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W +eEde+l+  vk+lG+++W+ Ia+  g++R++k+c++rw +yl
  Gorai.009G413600.2 17 KGPWHEEEDERLISFVKLLGSRRWDYIAQASGLKRSGKSCRLRWVNYL 64
                        79********************************************97 PP
2Myb_DNA-binding50.93.5e-1674115548
                         -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         ++eE+ +++++++++G++ W+ Iar+++ gRt++++k++w+++l
  Gorai.009G413600.2  74 SAEEEMIILKLHQKWGNK-WSMIARMLP-GRTDNEIKNYWRTHL 115
                         89****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3581264IPR017930Myb domain
SuperFamilySSF466891.24E-2814111IPR009057Homeodomain-like
SMARTSM007175.3E-131666IPR001005SANT/Myb domain
PfamPF002492.8E-151764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-221871IPR009057Homeodomain-like
CDDcd001672.63E-91964No hitNo description
PROSITE profilePS5129424.10665119IPR017930Myb domain
SMARTSM007173.4E-1569117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2372118IPR009057Homeodomain-like
CDDcd001672.94E-1174115No hitNo description
PfamPF002496.6E-1474115IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MANETTTAAM QGENLRKGPW HEEEDERLIS FVKLLGSRRW DYIAQASGLK RSGKSCRLRW  60
VNYLRPNLKH SSISAEEEMI ILKLHQKWGN KWSMIARMLP GRTDNEIKNY WRTHLRKKAV  120
IQDQGNFRFI QEDDNSSNSK TYNGESYNPF VDISDTQNSC YAAAPVSDFE TSPYETRLSD  180
WISEFLSDQS EIKSQLDSTT STTTTTTTPH SCNFYPAWFY EENDVWGYSG SLWNMD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-28151192105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6160101e-105JX616010.1 Gossypium hirsutum clone NBRI_GE60350 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443025.11e-178PREDICTED: myb-related protein 305 isoform X2
SwissprotQ9SCP16e-64MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A0D2SGK51e-177A0A0D2SGK5_GOSRA; Uncharacterized protein
STRINGGorai.009G413600.11e-167(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.19e-65myb domain protein 27
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]