PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G421200.1
Common NameB456_009G421200, LOC105768173
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 467aa    MW: 51289.1 Da    PI: 9.2014
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G421200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.23.4e-33194250360
                         -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  Gorai.009G421200.1 194 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHNHPK 250
                         9***************************************.***************85 PP
2WRKY104.36.6e-33384441259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg++WrKYGqK+vkg+++prsYYrCt  +C+v+k+ver+++dp+++++tYeg+Hnhe
  Gorai.009G421200.1 384 GDGFRWRKYGQKVVKGNPYPRSYYRCTNVKCSVRKHVERASDDPRAFITTYEGKHNHE 441
                         6********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-30184251IPR003657WRKY domain
SuperFamilySSF1182902.22E-26190251IPR003657WRKY domain
SMARTSM007741.3E-37192250IPR003657WRKY domain
PROSITE profilePS5081124.076194251IPR003657WRKY domain
PfamPF031066.7E-26194249IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-34368443IPR003657WRKY domain
SuperFamilySSF1182901.7E-28376443IPR003657WRKY domain
PROSITE profilePS5081134.693378443IPR003657WRKY domain
SMARTSM007743.6E-38383442IPR003657WRKY domain
PfamPF031063.8E-26385441IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MEVKEAERIV IAKPVASRPT CSSFKSFSEL LAGAINAAPP NACSANIVPA IRPKTVRFKP  60
VVNRAPSAMV SSQAEQSRIG ISISSDKVSK SDVKPTVVYK PQAKLVSKTT VSLLANMGNF  120
SASNQQRLQS MEAPVEYANW EKMRAQVRPN HHQNAPSQAE TDQTSEPSKV GSQNMEEDPK  180
VLPAVANSDR PSYDGYNWRK YGQKQVKGSE YPRSYYKCTH PNCPVKKKVE RSLDGQIAEI  240
VYKGEHNHPK PQPPKRNSSQ GLGVTSDGTG QDANNSLWSN NHNERNEGSE TRAENHSEVG  300
LSVLPAYQVK ALAPYEHVTT GGTSENSAGL SGECEEASKE GADVESKSKR RKNENQSSEV  360
GTLGECIQEP RVVVQSCTDS EIMGDGFRWR KYGQKVVKGN PYPRSYYRCT NVKCSVRKHV  420
ERASDDPRAF ITTYEGKHNH EMPLRNTNHV TAASDPDSNS PAIKDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-31194443877Probable WRKY transcription factor 4
2lex_A1e-31194443877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Leaf promordia, trichomes, atrichoblasts, fertilized eggs, seed coat.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698520.0KF669852.1 Gossypium hirsutum WRKY transcription factor 97 (WRKY97) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443399.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_012443400.10.0PREDICTED: WRKY transcription factor 44
SwissprotQ9ZUU01e-117WRK44_ARATH; WRKY transcription factor 44
TrEMBLA0A0D2U3K80.0A0A0D2U3K8_GOSRA; Uncharacterized protein
STRINGGorai.009G421200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83622740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-116WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  4. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  5. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  6. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  7. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]