PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G421200.6
Common NameB456_009G421200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 357aa    MW: 39687.5 Da    PI: 7.844
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G421200.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.82.3e-3384140360
                         -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  Gorai.009G421200.6  84 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHNHPK 140
                         9***************************************.***************85 PP
2WRKY104.84.4e-33274331259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg++WrKYGqK+vkg+++prsYYrCt  +C+v+k+ver+++dp+++++tYeg+Hnhe
  Gorai.009G421200.6 274 GDGFRWRKYGQKVVKGNPYPRSYYRCTNVKCSVRKHVERASDDPRAFITTYEGKHNHE 331
                         6********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-3074141IPR003657WRKY domain
SuperFamilySSF1182901.44E-2680141IPR003657WRKY domain
SMARTSM007741.3E-3782140IPR003657WRKY domain
PROSITE profilePS5081124.07684141IPR003657WRKY domain
PfamPF031064.5E-2684139IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-34258333IPR003657WRKY domain
SuperFamilySSF1182901.07E-28266333IPR003657WRKY domain
PROSITE profilePS5081134.693268333IPR003657WRKY domain
SMARTSM007743.6E-38273332IPR003657WRKY domain
PfamPF031062.6E-26275331IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MIGFSLQGNF SASNQQRLQS MEAPVEYANW EKMRAQVRPN HHQNAPSQAE TDQTSEPSKV  60
GSQNMEEDPK VLPAVANSDR PSYDGYNWRK YGQKQVKGSE YPRSYYKCTH PNCPVKKKVE  120
RSLDGQIAEI VYKGEHNHPK PQPPKRNSSQ GLGVTSDGTG QDANNSLWSN NHNERNEGSE  180
TRAENHSEVG LSVLPAYQVK ALAPYEHVTT GGTSENSAGL SGECEEASKE GADVESKSKR  240
RKNENQSSEV GTLGECIQEP RVVVQSCTDS EIMGDGFRWR KYGQKVVKGN PYPRSYYRCT  300
NVKCSVRKHV ERASDDPRAF ITTYEGKHNH EMPLRNTNHV TAASDPDSNS PAIKDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-3284333877Probable WRKY transcription factor 4
2lex_A4e-3284333877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Leaf promordia, trichomes, atrichoblasts, fertilized eggs, seed coat.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698520.0KF669852.1 Gossypium hirsutum WRKY transcription factor 97 (WRKY97) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443399.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_012443400.10.0PREDICTED: WRKY transcription factor 44
SwissprotQ9ZUU02e-83WRK44_ARATH; WRKY transcription factor 44
TrEMBLA0A0D2U0L90.0A0A0D2U0L9_GOSRA; Uncharacterized protein
STRINGGorai.009G421200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.22e-86WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  4. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  5. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  6. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  7. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]