PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G427800.1
Common NameB456_009G427800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 625aa    MW: 69945.5 Da    PI: 7.0436
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G427800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS417.61e-1272526202373
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         ++l ++cA+ +s+++  + + l+a+ +  +s +g+p+qRl ay++e+L ar   s+s++y++l+++e +    ++ l+++++++e++P+lk
  Gorai.009G427800.1 252 KQLWIACAKTLSENNIDKFNMLIAKARVAVSIYGEPIQRLGAYMMEGLVARKEASGSNIYRSLHCQEPE---GKDLLTYMHTLYEICPYLK 339
                         67889***************************************************************9...9****************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         f++++aN aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+  +   le++++rL  + e++g+p+ef+  
  Gorai.009G427800.1 340 FGYMAANGAIAEACRTEDRIHIIDFQIAQGTQWVTLLQALAARPGGAPYVRITGIDDPVSKyaRGGGLEAVERRLMALSEQFGIPVEFHG- 429
                         **********************************************************99999999************************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         +    +d++ ++L+vkpgEalaVn+ lqlh+++desv+++++rd +L++v+slsPkv+++veqe+++n+++Fl rf+e leyy a+f+s++
  Gorai.009G427800.1 430 MPVFAADITRDMLDVKPGEALAVNFPLQLHHTPDESVDVNNPRDGILRMVRSLSPKVITLVEQESNTNTAPFLPRFIENLEYYLAMFESID 520
                         6888999************************************************************************************ PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         +++pr+ +eri+vE+++l+r+ivnv+aceg+er+erhe ++kW++rl++aGF+p+pls+++++ ++ ll+ ++ + y++ e++g+++lgWk
  Gorai.009G427800.1 521 ETMPRHRRERINVEQHCLARDIVNVIACEGKERVERHELFGKWKSRLTMAGFRPYPLSSYVNSVMRGLLKCYS-KHYTLVEKDGAMLLGWK 610
                         *********************************************************************9998.55*************** PP

                GRAS 364 drpLvsvSaW 373
                         dr+L+s+SaW
  Gorai.009G427800.1 611 DRNLISASAW 620
                         ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.744225602IPR005202Transcription factor GRAS
PfamPF035143.6E-125252620IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
FEKRKFQIIK EVPILLTLEH WVLIFDSLKT RISRSHYRRG KLVQTHFMDS RLCRYGVISA  60
GLSYSTSSSA VPLVPNSLFS SLKSNIGNSP ISCFSTQPDC DTNTALSDSQ ERYNSTENLS  120
GYASCNSSLE SSTYFHQLSP SVDCRRESLL VHSDGTSYIE DANSSHEIVY TSQELGTALM  180
APDGANEVTN TPQTNGQQYR ASSKDCQGSS MCQPQTTFVT NCRQSTEAAR VEKRLTAIED  240
LSLQRIPPGN LKQLWIACAK TLSENNIDKF NMLIAKARVA VSIYGEPIQR LGAYMMEGLV  300
ARKEASGSNI YRSLHCQEPE GKDLLTYMHT LYEICPYLKF GYMAANGAIA EACRTEDRIH  360
IIDFQIAQGT QWVTLLQALA ARPGGAPYVR ITGIDDPVSK YARGGGLEAV ERRLMALSEQ  420
FGIPVEFHGM PVFAADITRD MLDVKPGEAL AVNFPLQLHH TPDESVDVNN PRDGILRMVR  480
SLSPKVITLV EQESNTNTAP FLPRFIENLE YYLAMFESID ETMPRHRRER INVEQHCLAR  540
DIVNVIACEG KERVERHELF GKWKSRLTMA GFRPYPLSSY VNSVMRGLLK CYSKHYTLVE  600
KDGAMLLGWK DRNLISASAW CCDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-6127462026374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443574.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_012443575.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_012443576.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A0D2QXK30.0A0A0D2QXK3_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.009G427800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145381022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-173scarecrow-like 5
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]