PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G427800.2
Common NameB456_009G427800, LOC105768270
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 578aa    MW: 64154.7 Da    PI: 6.2015
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G427800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4188.4e-1282055732373
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         ++l ++cA+ +s+++  + + l+a+ +  +s +g+p+qRl ay++e+L ar   s+s++y++l+++e +    ++ l+++++++e++P+lk
  Gorai.009G427800.2 205 KQLWIACAKTLSENNIDKFNMLIAKARVAVSIYGEPIQRLGAYMMEGLVARKEASGSNIYRSLHCQEPE---GKDLLTYMHTLYEICPYLK 292
                         67889***************************************************************9...9****************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         f++++aN aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+  +   le++++rL  + e++g+p+ef+  
  Gorai.009G427800.2 293 FGYMAANGAIAEACRTEDRIHIIDFQIAQGTQWVTLLQALAARPGGAPYVRITGIDDPVSKyaRGGGLEAVERRLMALSEQFGIPVEFHG- 382
                         **********************************************************99999999************************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         +    +d++ ++L+vkpgEalaVn+ lqlh+++desv+++++rd +L++v+slsPkv+++veqe+++n+++Fl rf+e leyy a+f+s++
  Gorai.009G427800.2 383 MPVFAADITRDMLDVKPGEALAVNFPLQLHHTPDESVDVNNPRDGILRMVRSLSPKVITLVEQESNTNTAPFLPRFIENLEYYLAMFESID 473
                         6888999************************************************************************************ PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         +++pr+ +eri+vE+++l+r+ivnv+aceg+er+erhe ++kW++rl++aGF+p+pls+++++ ++ ll+ ++ + y++ e++g+++lgWk
  Gorai.009G427800.2 474 ETMPRHRRERINVEQHCLARDIVNVIACEGKERVERHELFGKWKSRLTMAGFRPYPLSSYVNSVMRGLLKCYS-KHYTLVEKDGAMLLGWK 563
                         *********************************************************************9998.55*************** PP

                GRAS 364 drpLvsvSaW 373
                         dr+L+s+SaW
  Gorai.009G427800.2 564 DRNLISASAW 573
                         ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.744178555IPR005202Transcription factor GRAS
PfamPF035142.9E-125205573IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MDSRLCRYGV ISAGLSYSTS SSAVPLVPNS LFSSLKSNIG NSPISCFSTQ PDCDTNTALS  60
DSQERYNSTE NLSGYASCNS SLESSTYFHQ LSPSVDCRRE SLLVHSDGTS YIEDANSSHE  120
IVYTSQELGT ALMAPDGANE VTNTPQTNGQ QYRASSKDCQ GSSMCQPQTT FVTNCRQSTE  180
AARVEKRLTA IEDLSLQRIP PGNLKQLWIA CAKTLSENNI DKFNMLIAKA RVAVSIYGEP  240
IQRLGAYMME GLVARKEASG SNIYRSLHCQ EPEGKDLLTY MHTLYEICPY LKFGYMAANG  300
AIAEACRTED RIHIIDFQIA QGTQWVTLLQ ALAARPGGAP YVRITGIDDP VSKYARGGGL  360
EAVERRLMAL SEQFGIPVEF HGMPVFAADI TRDMLDVKPG EALAVNFPLQ LHHTPDESVD  420
VNNPRDGILR MVRSLSPKVI TLVEQESNTN TAPFLPRFIE NLEYYLAMFE SIDETMPRHR  480
RERINVEQHC LARDIVNVIA CEGKERVERH ELFGKWKSRL TMAGFRPYPL SSYVNSVMRG  540
LLKCYSKHYT LVEKDGAMLL GWKDRNLISA SAWCCDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-6222757326374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443574.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_012443575.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_012443576.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A0D2SHN80.0A0A0D2SHN8_GOSRA; Uncharacterized protein
STRINGGorai.009G427800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-174scarecrow-like 5
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]