PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G429100.1
Common NameB456_009G429100, LOC105768294
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 388aa    MW: 42885.5 Da    PI: 7.0714
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G429100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.21.9e-052773151154
                         HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ ++++ L++l+ +      +K + a++L +++eYIk L
  Gorai.009G429100.1 277 VRKEKMGDRISALQQLVSPF-----GKTDTASVLSEVIEYIKFL 315
                         5778999***********98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.72E-6259319No hitNo description
PROSITE profilePS5088812.309266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-9276335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-11276330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MADEFNPGPN WWDRTAAPSS SSSSSSSSSV LNNSLGTFGG WNPELADIKA RSPMDSISSS  60
SSSSVSAPDL HMMGLGLSSQ AMDWNQAFMR GDHKSETSFK SMLEEHNLNA SNPNYHQEMM  120
GFKHQSSSQF SPCSSDSTII NNMDSTSLYG SPSTILQGLL GTENQTYENR SINYQYGMNN  180
NDPLLPNSWS KVPQFLKNSP QKNGQLHFSN NAPFWNPSAA ATSPMVDHRP PGFFPSFPTP  240
NFDEKPKNNI SEVKKNGNET SSKRPRNEIP SLPAFKVRKE KMGDRISALQ QLVSPFGKTD  300
TASVLSEVIE YIKFLHEQIN VLSTPYKKTG ATTQQQQQTC EKSKDFEGFK HDLRSRGLCL  360
VPVSSTFPMT HESTVDFWTP TFGGTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443606.10.0PREDICTED: transcription factor bHLH123-like isoform X2
SwissprotQ8GXT35e-67BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A0D2SHQ10.0A0A0D2SHQ1_GOSRA; Uncharacterized protein
STRINGGorai.009G429100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]