PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G443400.1
Common NameB456_009G443400, LOC105768493
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 208aa    MW: 23223.9 Da    PI: 7.5829
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G443400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.3e-212070155
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++y+GVr ++ +gr++AeIrd ++    ++r++lg+f++aeeAa+a++ a+  l+g
  Gorai.009G443400.1 20 PKYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEEAARAYDTAAMTLRG 70
                        79********.**********883....5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.29E-332080No hitNo description
PfamPF008472.3E-142070IPR001471AP2/ERF domain
PROSITE profilePS5103224.0262178IPR001471AP2/ERF domain
SMARTSM003802.6E-382184IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-232179IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-322178IPR001471AP2/ERF domain
PRINTSPR003674.1E-112233IPR001471AP2/ERF domain
PRINTSPR003674.1E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MRRERGPAAA AAAVPDGEEP KYRGVRKRPW GRFAAEIRDP WKKTRVWLGT FDSAEEAARA  60
YDTAAMTLRG PKAKTNFPIN PSNTTAFPID HHHRRLYPMG NFQDPDMNPQ RPTRSSMSST  120
VESFSGPRPT QPPPESVVSD RKYHHHRKPP VLPEDFHSDC DSSSSVVVDD GDMASSSCKQ  180
NQTLKPFDLN FPPLDDVDDL YCTALCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2218781172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5552880.0KF555288.1 Gossypium barbadense ERF transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443884.11e-153PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9LDE48e-48ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A0D2U4L51e-152A0A0D2U4L5_GOSRA; Uncharacterized protein
STRINGGorai.009G443400.11e-153(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.17e-37ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]