PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G446100.3
Common NameB456_009G446100, LOC105768519
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 382aa    MW: 42594.4 Da    PI: 7.2587
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G446100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS441.27.5e-135103801374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l+elL +cA+a++++d++l++ l+++l++++s +g+p qRl ay++e+L arla+s+s++yk+l+++e +   sse l+++++++e++P++
  Gorai.009G446100.3  10 LKELLCACAKAIENKDMHLTDCLMTQLRQMVSVSGEPKQRLGAYMLEGLVARLASSGSSIYKSLRCKEPA---SSELLSYMHILYEICPYF 97 
                         5799*****************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf+++ aN aI ea++ e+rvHiiDf+i qG QW++L+ aLa+Rp+gpps+RiTg+++++s   +   le +++rL+k+Ae ++vpfef++
  Gorai.009G446100.3  98 KFGYMSANGAIAEAMKDESRVHIIDFQIAQGSQWLTLIPALAARPGGPPSIRITGIDDSTSAyaRGGGLEIVRQRLSKVAELCKVPFEFHA 188
                         **********************************************************998899999************************ PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +a + +d+++e+Lr++pgEa+aVn++++lh+++desv  +++rd++L+l kslsPkvv++veqea++n+++F+ rfle+++++  +f+s+
  Gorai.009G446100.3 189 -AAISATDVQFENLRIQPGEAVAVNFAMMLHHMPDESVGAQNHRDRLLRLAKSLSPKVVTLVEQEANTNTAPFVPRFLETMNHFLPIFESI 278
                         .8999************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++lpr+++eri+vE+++l+reivn++aceg er+erhe l+kWr+r+ +aGFkp pls+++++++k+ll+ + +  y++++++g l+lgW
  Gorai.009G446100.3 279 DVSLPRDHKERINVEQHCLAREIVNIIACEGPERVERHELLGKWRSRFIMAGFKPFPLSSFVNSTIKSLLQSYCD-KYTLDDKDGVLLLGW 368
                         **************************************************************************5.5************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         ++r++v+ +aWr
  Gorai.009G446100.3 369 MNRAIVASCAWR 380
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.5371361IPR005202Transcription factor GRAS
PfamPF035142.6E-13210380IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MMEMIAQGDL KELLCACAKA IENKDMHLTD CLMTQLRQMV SVSGEPKQRL GAYMLEGLVA  60
RLASSGSSIY KSLRCKEPAS SELLSYMHIL YEICPYFKFG YMSANGAIAE AMKDESRVHI  120
IDFQIAQGSQ WLTLIPALAA RPGGPPSIRI TGIDDSTSAY ARGGGLEIVR QRLSKVAELC  180
KVPFEFHAAA ISATDVQFEN LRIQPGEAVA VNFAMMLHHM PDESVGAQNH RDRLLRLAKS  240
LSPKVVTLVE QEANTNTAPF VPRFLETMNH FLPIFESIDV SLPRDHKERI NVEQHCLARE  300
IVNIIACEGP ERVERHELLG KWRSRFIMAG FKPFPLSSFV NSTIKSLLQS YCDKYTLDDK  360
DGVLLLGWMN RAIVASCAWR C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-64143808375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443928.10.0PREDICTED: scarecrow-like protein 5
RefseqXP_012443929.10.0PREDICTED: scarecrow-like protein 5
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A0D2U1W50.0A0A0D2U1W5_GOSRA; Uncharacterized protein
TrEMBLA0A0D2U4T00.0A0A0D2U4T0_GOSRA; Uncharacterized protein
STRINGGorai.009G446100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]