PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G007700.1
Common NameB456_010G007700, LOC105772490
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 307aa    MW: 35204.1 Da    PI: 8.4828
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G007700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-092402781854
                         HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         lF+   ++yp+ + +  L++++gLt++qV++WF N R +
  Gorai.010G007700.1 240 LFQHflHPYPTDSVKLMLSSQTGLTKNQVSNWFINARVR 278
                         5775569******************************88 PP
2BELL79.16.2e-26128198272
                BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         ++el++  +kL+ lleeV+ +Y++y++ +++v+s Fe ++g+g+a+ Yt+l l+a+ rhF  L+d i  +i
  Gorai.010G007700.1 128 KHELHITLTKLIGLLEEVETQYEKYNNRMEQVVSLFESIVGVGAARCYTALTLQAMCRHFGKLRDTILTRI 198
                         7899***************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.0E-1677196IPR006563POX domain
PfamPF075261.3E-2782194IPR006563POX domain
SMARTSM003891.1E-8222286IPR001356Homeobox domain
CDDcd000864.64E-11222283No hitNo description
Gene3DG3DSA:1.10.10.601.8E-26227287IPR009057Homeodomain-like
SuperFamilySSF466891.03E-16228289IPR009057Homeodomain-like
PfamPF059201.9E-16239278IPR008422Homeobox KN domain
PROSITE profilePS5007111.159241282IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MESRQTPDRT SRMLHHFDAY NTEISHTRHL LDLLGAPNDS NRRHRTQTLS LSLGSCMLGS  60
SFPGAEDTGD DYPFIGHPTT YVIGNSRYLI PAQSLLNELV NVGFKNIDET PKLSSEFFRS  120
KIVPSPDKHE LHITLTKLIG LLEEVETQYE KYNNRMEQVV SLFESIVGVG AARCYTALTL  180
QAMCRHFGKL RDTILTRINC IRTKVRHDFR HSNTLCVQRQ VWRPVRGLPQ TSVAILRSWL  240
FQHFLHPYPT DSVKLMLSSQ TGLTKNQVSN WFINARVRLW KPMIEEIYKE EFADSPQHVS  300
HDLIEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-16228286563Homeobox protein Meis2
3k2a_B6e-16228286563Homeobox protein Meis2
4xrs_A5e-16228285158Homeobox protein Meis1
4xrs_B5e-16228285158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449212.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD18e-73BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A0D2U6R40.0A0A0D2U6R4_GOSRA; Uncharacterized protein
STRINGGorai.010G007700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97362734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.13e-75BEL1-like homeodomain 11
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]