PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G022600.2

Common Name

B456_010G022600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 285aa MW: 31035.3 Da PI: 8.9873

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G022600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.8	1.7e-31	210	268	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYeg+Hnh+ Gorai.010G022600.2 210 HDDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAVEDPRMLIVTYEGDHNHS 268 69***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	5.9E-17	160	207	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.1E-33	197	268	IPR003657	WRKY domain
PROSITE profile	PS50811	31.169	204	270	IPR003657	WRKY domain
SuperFamily	SSF118290	1.19E-26	207	268	IPR003657	WRKY domain
SMART	SM00774	9.1E-37	209	269	IPR003657	WRKY domain
Pfam	PF03106	8.8E-27	211	267	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MTVELMMGHG GVGGRGNSFP VKMEETALKE AANAGIQGFE ELIRLMSKSQ QLCSQDVCFN 60 APSSSEPAME IQAVTDKTIQ VSKDEEVSTF KPLCSTPSYK LPPLPTKSSH VLKTGVLEPG 120 NSVMSSLTGD TDSIQHQPCF SLGFQFTNPS SHGKPPLSSK RKCNSMDDVA NLKCGSSSSA 180 RCHCSKKRKS RVKRVIRVPA VSNKMADIPH DDYSWRKYGQ KPIKGSPHPR GYYKCSSVRG 240 CPARKHVERA VEDPRMLIVT YEGDHNHSHN ITTDVPSALV LESS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-22	197	267	2	71	WRKY transcription factor 1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269\|PubMed:11722756}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ651068	0.0	HQ651068.1 Gossypium hirsutum WRKY17 transcription factor mRNA, complete cds.
GenBank	KF031084	0.0	KF031084.1 Gossypium hirsutum WRKY transcription factor 37 (WRKY37) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452137.1	0.0	PREDICTED: probable WRKY transcription factor 7
Swissprot	Q9STX0	6e-78	WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBL	A0A0D2V4G4	0.0	A0A0D2V4G4_GOSRA; Uncharacterized protein
STRING	Gorai.010G022600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24240.1	9e-65	WRKY DNA-binding protein 7

Link Out ? help Back to Top
Phytozome	Gorai.010G022600.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]