PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G027700.2

Common Name

B456_010G027700, LOC105772736

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRF

Protein Properties

Length: 564aa MW: 60685.8 Da PI: 7.6643

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G027700.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.2	1.6e-24	232	276	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Gorai.010G027700.2 232 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 276 79****************************************985 PP
2	QLQ	61.3	2.7e-21	162	198	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ +n+P+P++Ll +i+k Gorai.010G027700.2 162 GPFTPSQWMELEHQALIYKYITSNVPIPSNLLIPIRK 198 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.9E-12	162	198	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.641	163	198	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.1E-15	163	197	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.663	232	276	IPR014977	WRC domain
Pfam	PF08879	6.6E-21	233	275	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence Send to blast
MDIGGVVVGL EGFVGSETVV TSSLVSDPET KAKLYGSGFL KQERPGNNED VLLWRSSKLA 60 KTEGVSASEA MPLLLHDKNS LLRSNANATT SVFSDGVSAS QAMLSFSSAP KSRALSVDKS 120 SQNVTFPYFH LTSPASTRNT GYNNGGFNGE NMHGVLLGGD RGPFTPSQWM ELEHQALIYK 180 YITSNVPIPS NLLIPIRKAL GSTDFSSFSG APLKTNTLGW GAFRLGFSNN TDPEPGRCRR 240 TDGKKWRCSR DAVADQKYCE RHMNRGRHRS RKPVEGQSGH SAGATSTTTT KVMSTVSSAL 300 ASVVVPISGC SESNSLTVAQ QQFKNLQPVT APVNRLLVNK ETSGERLHES TLDLKSKENS 360 FLMPMQQLIT TFGSSQDLIC QATESQHSLR EFIDDWPKSQ SDRSTISWPE VDVKSDMTQL 420 SISIPMAASD FMSSTSSPSN EKLSSSPLRL SREFDTMHMG LGVGSVINEP NHKQANWIPI 480 SWENSMGGPL GEVLHSTNSS ALNLITCDDW NNSHGQRLAS SPTGVLTKTT FGSVSNSSAG 540 SSPRPENDLL GSTLVHTSSL PAL*

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence Send to blast

MDIGGVVVGL EGFVGSETVV TSSLVSDPET KAKLYGSGFL KQERPGNNED VLLWRSSKLA  60
KTEGVSASEA MPLLLHDKNS LLRSNANATT SVFSDGVSAS QAMLSFSSAP KSRALSVDKS  120
SQNVTFPYFH LTSPASTRNT GYNNGGFNGE NMHGVLLGGD RGPFTPSQWM ELEHQALIYK  180
YITSNVPIPS NLLIPIRKAL GSTDFSSFSG APLKTNTLGW GAFRLGFSNN TDPEPGRCRR  240
TDGKKWRCSR DAVADQKYCE RHMNRGRHRS RKPVEGQSGH SAGATSTTTT KVMSTVSSAL  300
ASVVVPISGC SESNSLTVAQ QQFKNLQPVT APVNRLLVNK ETSGERLHES TLDLKSKENS  360
FLMPMQQLIT TFGSSQDLIC QATESQHSLR EFIDDWPKSQ SDRSTISWPE VDVKSDMTQL  420
SISIPMAASD FMSSTSSPSN EKLSSSPLRL SREFDTMHMG LGVGSVINEP NHKQANWIPI  480
SWENSMGGPL GEVLHSTNSS ALNLITCDDW NNSHGQRLAS SPTGVLTKTT FGSVSNSSAG  540
SSPRPENDLL GSTLVHTSSL PAL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ566978	1e-74	AJ566978.1 Gossypium hirsutum microsatellite DNA mGhCIR029, clone CIR029.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012449608.1	0.0	PREDICTED: growth-regulating factor 1-like isoform X2
TrEMBL	A0A0D2U7X7	0.0	A0A0D2U7X7_GOSRA; Uncharacterized protein
STRING	Gorai.010G027700.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-97	growth-regulating factor 1

Link Out ? help Back to Top
Phytozome	Gorai.010G027700.2
Entrez Gene	105772736

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]