PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G028200.5
Common NameB456_010G028200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 277aa    MW: 30419.1 Da    PI: 8.4936
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G028200.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.1e-10117165355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Gorai.010G028200.5 117 NSHSLAERVRREKISERMKLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 165
                         58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-17112181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.00E-10112169No hitNo description
PROSITE profilePS5088815.586114164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-17115182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-8117165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MNHEGGIERA STNSTQSRDD RQISEEGVVG ASPNRKCRKR VHEANQNADE ELKKDPSGES  60
CDVQKEHDSK KQKTEQNATA NSRGKQVVKQ AKDSSQTGEA PKENYIHVRA RRGQATNSHS  120
LAERVRREKI SERMKLLQEL VPGCNKITGK AVMLDEIINY VQSLQQQVEF LSMKLATVNP  180
ELNIDLERIL SKEILHSRGG NAAVVGFNPG INLSHPFSSG IFPGTISGIP NTNPQFPPFP  240
PQTVLDNELQ NLFQMGFDSS SAMDSLGPIG RLKPGL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451289.10.0PREDICTED: transcription factor bHLH74
RefseqXP_012451290.10.0PREDICTED: transcription factor bHLH74
RefseqXP_012451291.10.0PREDICTED: transcription factor bHLH74
RefseqXP_016726918.10.0PREDICTED: transcription factor bHLH74-like isoform X1
RefseqXP_016726919.10.0PREDICTED: transcription factor bHLH74-like isoform X1
SwissprotQ6NKN97e-89BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A0D2U5010.0A0A0D2U501_GOSRA; Uncharacterized protein
STRINGGorai.010G028200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-85bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]