PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G031800.2

Common Name

B456_010G031800, LOC105773833

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 248aa MW: 28371.8 Da PI: 4.4321

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G031800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34	5.1e-11	165	208	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y k+L Gorai.010G031800.2 165 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYTKEL 208 589*******************66......************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.13E-5	157	220	No hit	No description
SuperFamily	SSF47459	2.09E-15	159	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.542	159	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-8	165	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-11	165	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-15	166	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MEINEESFLE ELLALRRENW DTVPTQMNEV FSNGWNFDCF DDMNLSTSLF PTTFCHEFST 60 ALPLEQDLGY FNGVYCPFGD EFSAPQLTDS SNNTFDTPPP FPNMLEEEES GFLADELNKL 120 DVQVPCKAEP FQSPEAPVFN NEAAACLDRK NRGKKMEGQQ PSKNLMAERR RRKRLNDRLS 180 MLRSIVPKIS KMDRTSILGD TIDYTKELLE RIKSLQQETE TDSNELNMAH IFKGGKSNEI 240 FVRNTPK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	174	ERRRRKRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012451444.1	0.0	PREDICTED: transcription factor bHLH93-like
TrEMBL	A0A0D2R190	0.0	A0A0D2R190_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2SLV0	0.0	A0A0D2SLV0_GOSRA; Uncharacterized protein
TrEMBL	A0A2P5RRT0	0.0	A0A2P5RRT0_GOSBA; Uncharacterized protein
STRING	Gorai.010G031800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.2	2e-29	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	Gorai.010G031800.2
Entrez Gene	105773833

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]