PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G036300.1
Common NameB456_010G036300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 246aa    MW: 27101 Da    PI: 6.4415
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G036300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.62.5e-3252109260
         ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                         ++vrY+eClkNhA+s+GghavDGC+Ef+++ g+egt++alkCaAC+CHRnFHR+e+e e
  Gorai.010G036300.1  52 TTVRYRECLKNHAVSIGGHAVDGCCEFIAA-GDEGTVEALKCAACNCHRNFHRKETEGE 109
                         589**************************9.999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.5E-3054106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2155107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-2755105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.45256105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.8E-32172241IPR009057Homeodomain-like
SuperFamilySSF466896.87E-21173241IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-28183240IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDFDEHDDQE EEMGMAVPPG YDSLGTLSET WSKPGPTPTG GGDGLARKVG STTVRYRECL  60
KNHAVSIGGH AVDGCCEFIA AGDEGTVEAL KCAACNCHRN FHRKETEGES NVYSYNPHYH  120
HHQQYPQFSP YYRAPPPAGY LHLTPPSQYR PLALPAASGG GGDSREEEDF SNPSSSGGGG  180
GSKKRFRTKF TAEQKEKMLD FAEKLGWRIQ KHDEAAIQQF CEETGVKRHV LKVWMHNNKN  240
TLDLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-301822411675ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6162141e-133JX616214.1 Gossypium hirsutum clone NBRI_GE60696 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012450172.10.0PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotQ9SB613e-75ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A0D2V5790.0A0A0D2V579_GOSRA; Uncharacterized protein
STRINGGorai.010G036300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45052454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.16e-71homeobox protein 22
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]