PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G046000.1
Common NameB456_010G046000, LOC105774251
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 577aa    MW: 63369.7 Da    PI: 6.8458
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G046000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.24.2e-25116217199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+ltpsd+++ g +++p+ +a+++         ++ +  tlt++d +g +We+++iyr++++r++lt+GW++Fv++++L +gD+vvF+ 
  Gorai.010G046000.1 116 FAKILTPSDANNGGGFSVPRFCADSIfppldynADPPVQ--TLTVTDIRGGVWEFRHIYRGTPRRHLLTTGWNKFVNQKKLIAGDSVVFM- 203
                         89*********************999****996545445..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++ +++++++v+r+
  Gorai.010G046000.1 204 -RDCNGKMFIGVRRA 217
                         .5689999****985 PP
2Auxin_resp78.91.2e-26255337182
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                         +a++a+++ +FevvY+Pr ++++Fvv++e ve+ l++ ++ G+R+kma+etedss+ ++ +Gtv++   +d+  W +S+Wr+L
  Gorai.010G046000.1 255 VAERAAKGLPFEVVYYPRPGWTDFVVRAELVEAGLNIYWAGGTRVKMAVETEDSSRMTCfQGTVISGALSDSGPWIGSPWRML 337
                         678999****************************************************99**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-28110220IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-33112218IPR015300DNA-binding pseudobarrel domain
CDDcd100172.46E-20115216No hitNo description
PfamPF023622.9E-22116217IPR003340B3 DNA binding domain
SMARTSM010193.9E-21116218IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943116218IPR003340B3 DNA binding domain
PfamPF065072.8E-23256337IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MPPPRPPAAE VRHVDLRIWR ACAGSSVQIP TVNSIVYYFP QGHVEQSCGS TPLLSSLVLS  60
RPLIPCVVSD VHCLADPRTD EVFIKLFLVP VEPSRLPNQF LDVNGEVEDP DKIVSFAKIL  120
TPSDANNGGG FSVPRFCADS IFPPLDYNAD PPVQTLTVTD IRGGVWEFRH IYRGTPRRHL  180
LTTGWNKFVN QKKLIAGDSV VFMRDCNGKM FIGVRRALKR GEGGGDSRRW REPTGGGATK  240
GDGRGRMTAE VVVEVAERAA KGLPFEVVYY PRPGWTDFVV RAELVEAGLN IYWAGGTRVK  300
MAVETEDSSR MTCFQGTVIS GALSDSGPWI GSPWRMLLVA WDEPDLQNVR RVNPWQVEIA  360
TSLPLQSSFP LAKKSKFSQE SGLADAEGEI MFPMTGLTNS TMRYMNPSLL NYNSFPAGMQ  420
GARQNHFHVQ GLTNHVSENT PMMSTDASSS NYWVPKLKRI STELNIGSSQ SDNLSPDSQS  480
SMVSFGTEFT ENAGCNLSKV GVNSFQLFGK TIHMKEPGGS MFGNVGSMED DSGKRYDEAV  540
REKNSLDLSS TNDYSKLHDR IDVKSESASA FKGFSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-651436251392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452124.10.0PREDICTED: auxin response factor 17
RefseqXP_012452125.10.0PREDICTED: auxin response factor 17
RefseqXP_012452126.10.0PREDICTED: auxin response factor 17
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A0D2R1Z50.0A0A0D2R1Z5_GOSRA; Auxin response factor
STRINGGorai.010G046000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-168auxin response factor 17
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  3. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  4. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  5. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  6. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  7. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]