PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G048900.1
Common NameB456_010G048900, LOC105771594
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 219aa    MW: 23858.9 Da    PI: 5.6881
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G048900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-183282155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  Gorai.010G048900.1 32 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 82
                        59*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.06E-203290No hitNo description
SMARTSM003806.8E-353396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-303391IPR001471AP2/ERF domain
PfamPF008471.2E-113382IPR001471AP2/ERF domain
PROSITE profilePS5103221.6943390IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-203391IPR016177DNA-binding domain
PRINTSPR003671.4E-83445IPR001471AP2/ERF domain
PRINTSPR003671.4E-85672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVKTEHKIQP HQSKQMASSS SSSPPPSSLC KKKYKGVRMR SWGSWVSEIR APNQKTRIWL  60
GSYSTPEAAA RAYDAALLCL KGSSANLNFP LTSSHYVPDT IMSPKSIQRV AAAAANSFVD  120
DNPAAAATPP ISPPLAPSTP STTSSPSNQV DDDVFFIQAL VDEPVSMMEP WYCFDSLQMQ  180
SPKFGDQVFN VTPFDPPSMT TIDDLYEEAG DIRLWSFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-143291464ATERF1
3gcc_A1e-143291464ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed cotyledons, ovules and seeds of immature siliques. {ECO:0000269|PubMed:21069430}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6167761e-128JX616776.1 Gossypium hirsutum clone NBRI_GE61662 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448481.11e-160PREDICTED: ethylene-responsive transcription factor ERF014-like
SwissprotQ9SFE42e-47ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLA0A0D2U9291e-159A0A0D2U929_GOSRA; Uncharacterized protein
STRINGGorai.010G048900.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.11e-37ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  3. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]