PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G062900.1

Common Name

B456_010G062900, LOC105774521

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

YABBY

Protein Properties

Length: 177aa MW: 19772.4 Da PI: 8.2215

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G062900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	217.6	3.8e-67	7	161	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a+ + + +++ + ++ e+ +++l s + ++++ + Gorai.010G062900.1 7 VVPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAASQSLSWQDI--QAPNNAIED---YRRDLGSSSKCSHNKLSM 92 579**************************************9998877655555542..222223333...333444444444444444 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ l++n +ee v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Gorai.010G062900.1 93 RP--PLPNNATEERV----VNRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 161 44..47778777766....89**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.2E-71	9	161	IPR006780	YABBY protein
SuperFamily	SSF47095	1.7E-8	104	154	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.0E-5	109	155	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MSSCIEVVPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAASQSL 60 SWQDIQAPNN AIEDYRRDLG SSSKCSHNKL SMRPPLPNNA TEERVVNRPP EKRQRVPSAY 120 NRFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG LMLETNNQTK MNNGSG*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452487.1	1e-130	PREDICTED: axial regulator YABBY 5-like isoform X2
Swissprot	Q8GW46	2e-83	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A0D2U9P1	1e-129	A0A0D2U9P1_GOSRA; Uncharacterized protein
STRING	Gorai.010G062900.1	1e-129	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	6e-86	YABBY family protein

Link Out ? help Back to Top
Phytozome	Gorai.010G062900.1
Entrez Gene	105774521

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]