PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G086300.5
Common NameB456_010G086300, LOC105773066
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YA
Protein Properties Length: 170aa    MW: 18249.5 Da    PI: 10.5958
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G086300.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.58.2e-321975158
           CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                        d p+YVNaKQy++Il+RR  Rakle+++kl  ksrkpylheSRh hA++R RgsgGrF
  Gorai.010G086300.5 19 DGPVYVNAKQYHGILRRRRYRAKLEAQNKL-VKSRKPYLHESRHLHAVNRVRGSGGRF 75
                        57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-341778IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.0041878IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.8E-232143IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.8E-272175IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068602343IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.8E-235275IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MAGGSAPARL PLPLDLAEDG PVYVNAKQYH GILRRRRYRA KLEAQNKLVK SRKPYLHESR  60
HLHAVNRVRG SGGRFLSKKK LQQPHHPTSN PSSRSISDAS CLDRKNSGSE LESHLHGGGC  120
SSSSTSCSDI SSASNNNGSF QLRKHGFMDI SPGVSSMCNG LQNCASVGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-221985268NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012450144.11e-119PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X2
SwissprotQ93ZH29e-39NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A0D2SPM61e-119A0A0D2SPM6_GOSRA; Uncharacterized protein
TrEMBLA0A0D2UB751e-117A0A0D2UB75_GOSRA; Uncharacterized protein
TrEMBLA0A0D2UB811e-118A0A0D2UB81_GOSRA; Uncharacterized protein
TrEMBLA0A0D2V7I21e-118A0A0D2V7I2_GOSRA; Uncharacterized protein
STRINGGorai.010G086300.11e-119(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.17e-33nuclear factor Y, subunit A5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]