PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G086300.6

Common Name

B456_010G086300, LOC105773066

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 338aa MW: 36922.4 Da PI: 9.4958

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G086300.6	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	99.8	2.8e-31	187	243	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RR Rakle+++kl ksrkpylheSRh hA++R RgsgGrF Gorai.010G086300.6 187 DGPVYVNAKQYHGILRRRRYRAKLEAQNKL-VKSRKPYLHESRHLHAVNRVRGSGGRF 243 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.6E-34	185	246	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.004	186	246	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	8.0E-23	189	211	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	9.6E-27	189	243	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	191	211	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	8.0E-23	220	243	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MSYMAVRVQS LSKKNFDERF SILSLPHMSV GFQPWWNSNE QKIAHSLPQN ISLKVETPSK 60 LHHNAKHLDH QLPDQESTSA QAICQSRPEM GVTRGSNPSF YSSDFGQDES CGKDIEGQMK 120 PINNPNTVFS PSNPNYNLSM ASAQYPYADV CIGGLFTPYG QPAIIQAQMA GGSAPARLPL 180 PLDLAEDGPV YVNAKQYHGI LRRRRYRAKL EAQNKLVKSR KPYLHESRHL HAVNRVRGSG 240 GRFLSKKKLQ QPHHPTSNPS SRSISDASCL DRKNSGSELE SHLHGGGCSS SSTSCSDISS 300 ASNNNGSFQL RKHGFMDISP GVSSMCNGLQ NCASVGL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	9e-21	187	253	2	68	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012450139.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
Refseq	XP_012450140.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
Refseq	XP_012450141.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
Refseq	XP_012450142.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
TrEMBL	A0A0D2UB75	0.0	A0A0D2UB75_GOSRA; Uncharacterized protein
STRING	Gorai.010G086300.1	1e-159	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24400	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	4e-35	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Gorai.010G086300.6
Entrez Gene	105773066

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]