PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G091100.1
Common NameB456_010G091100, LOC105774534
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 199aa    MW: 22027.5 Da    PI: 4.5855
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G091100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.9e-181666155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s++kGVr +k +g+Wv+eIr p++   r r++lg++++ae+Aa+a +aa  +l+g
  Gorai.010G091100.1 16 SRFKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSAEKAARAFDAALFCLRG 66
                        789****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-201675IPR016177DNA-binding domain
CDDcd000187.31E-301676No hitNo description
PfamPF008478.4E-111666IPR001471AP2/ERF domain
SMARTSM003804.3E-311780IPR001471AP2/ERF domain
PROSITE profilePS5103221.9041774IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-281775IPR001471AP2/ERF domain
PRINTSPR003675.1E-91829IPR001471AP2/ERF domain
PRINTSPR003675.1E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVKHISEKPA VERSDSRFKG VRKRKWGKWV SEIRLPNSRE RIWLGSYDSA EKAARAFDAA  60
LFCLRGRSSK FNFPDNPPEI AGARSLTRPQ IQAAAAQFAN SEPPRIQSEQ SNSGFQTESP  120
SPSVSDGTVQ LDSELPMDGS FLDLLTIGSG IYESDYGLIF PGFEDFSSDF LGSSLPNVGY  180
EEDYLDGILV PESFLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1416741372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6165261e-107JX616526.1 Gossypium hirsutum clone NBRI_GE61260 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452516.11e-143PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC22e-58ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A0D2R4S11e-141A0A0D2R4S1_GOSRA; Uncharacterized protein
STRINGGorai.010G091100.11e-142(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.18e-61ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  4. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]