PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G096100.1

Common Name

B456_010G096100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 115aa MW: 13437 Da PI: 10.4772

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G096100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	58.4	9.1e-19	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r ++ rq+ +skR+ gilKKA+ELS+LCd+e +++ s+tgk Gorai.010G096100.1 10 RLKDMKARQTKYSKRKRGILKKAKELSILCDVELVILLSSPTGK 53 5678889***********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	21.824	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.1E-23	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00120	2.43E-19	2	57	No hit	No description
SuperFamily	SSF55455	8.76E-22	2	75	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-15	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.4E-17	12	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-15	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-15	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MGRKKLKIQR LKDMKARQTK YSKRKRGILK KAKELSILCD VELVILLSSP TGKPTLFVGQ 60 NPNGLYNILQ KVSNMLFVER EERGLKNLEI IVDLNQIEFM EDYLIESLNE LRNMK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448418.1	2e-46	PREDICTED: truncated transcription factor CAULIFLOWER A-like
TrEMBL	A0A0D2U5P8	1e-75	A0A0D2U5P8_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.010G096100.1	2e-76	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7330	18	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	3e-23	AGAMOUS-like 65

Link Out ? help Back to Top
Phytozome	Gorai.010G096100.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]